PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G01720.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB_related

Protein Properties

Length: 1874aa MW: 202652 Da PI: 7.5971

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G01720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.3e-08	950	993	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT eE e + + + +G++ +++I++ + ++t +c+++++k+ LPERR05G01720.1 950 NPWTREEKEVFMEKLATFGKD-FSKISSFLK-HKTTADCIEFYYKH 993 58***************99.****9.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.48E-14	936	997	IPR009057	Homeodomain-like
PROSITE profile	PS51293	16.266	947	998	IPR017884	SANT domain
SMART	SM00717	2.2E-8	948	996	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-6	950	993	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-6	951	995	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.269	1154	1205	IPR017884	SANT domain
SMART	SM00717	7.9E-5	1155	1203	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.58E-9	1158	1205	IPR009057	Homeodomain-like
CDD	cd00167	3.62E-4	1159	1197	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1874 aa Download sequence Send to blast
MASTPAAGSA GDERRRWRRG RGGFGFGAGG RRPPRGREDA NQLGLTAWVG LRLLSIPPSV 60 FLPSEPKAIL SPLSLSLSSP LLLPPPPPPS SQISAGLLLR LRLPDVVFSA PPGVAACTVA 120 TSACIDDDHH SHLPPPLKEG REVGFSCLCD CGGATAADQD RCRLCRRRVG SDRRKRSWLR 180 RAYVICGGGR SCGRRRPRRR GCLPRRRIGG TSCTGTAAGM TAAAASPSHR QPPRRRVGAT 240 RRTTRLRRRL PSATTPGPHL AARRRRPPQG GGSYDRSYPD ESLGYTPSRS ERYWLEEDGY 300 KGFSRYGGGG GGGGGSRRDG RDMRGSYRRS PFRGYGSDFS RNHQEHLPPP LRRSPLRSIA 360 VSTSYDPSGD RADRGDRDHH HRVTPWRPVR RRESRSDAGD AAGAGAVPVG QAAAAPVSEK 420 DVSAQSLAVA APQVSEEEAP RKKPRLGWGQ GLAKYEKQKV QGPADSAEAV VEGSPTATEQ 480 KTATQTPASE PCTSPVVAAP SLSVAAPSPA PPCKSPVPEE KSCEVTNTVA ESNKNIPEAD 540 VQACNNEIPI TLDQLEGDPI DSLAKVLSEL VQHEDSCSGD SKRLTNSSKL LLLKESISKE 600 LEKTELEIDS LEGELKSVNA EARKRTLRDP PATVTYAQDP SPSPVKEQGE LTPSPNISME 660 QDADVKVVDP MEVETAQAHN PKAVSSEESV ACPEIAQGQV SAAADVVPCD ASRKIGPAID 720 VDNEQHEVDP CHDNLNAMKE DGSIGLTTKP CSSHDANLFH QITAVNMNEA KDASELLFKH 780 VPADQSHLDL LTLNHLSSRE KDDLIIKRKH AILKNRQRFK EQILTFKFRV LRHLWKEDVR 840 LLSVRKQRSK SHKRTDQSNR AAQSGSQRQR SSNRSRLSVP AGNINTFPIT EMSGVANKLF 900 SEFQLKRCRN YLKMPTQIID EKEKVGARFV SKNGLVEDPI LVEKERALVN PWTREEKEVF 960 MEKLATFGKD FSKISSFLKH KTTADCIEFY YKHHKSESFR EVKKLLDLRQ QQQPASNYLG 1020 AISGKKWNPE ANAASLDMLG VATEVAAQGL EYANEVKKNS AKSIMRNACG ADNSSKGSED 1080 CVGDVSLHER ESVAADVLAG ICGTLSPEGM GSCITSSADP GQKMGISRME HLLTPEADKN 1140 FDDDGTVSDQ ECEVDIVDWN DDEKSIFIEA ISNYGKDFAQ ISSCVKSKSF EQCKVFFSKA 1200 RKSLGLDMIR QSAADAGFPT GDGNGGRSGT DGACVAEMDS AICSAQSCPE MEIDACPVSD 1260 GDIQGHHPLS DIVSEPAEAD KSNVPDIDVN VEESAVPDID VNVEEGGSKA EKNHNIIVDH 1320 KQLCEDTRQT SCAHIDINCP ESTDTLQDIE DVAPVNMHGN DATVEQAVAA HVDIRSSLHP 1380 VEVVESSRVS EGNSMDLSSK GRSHGSEFGK GGKSTLSVCL PANGVSKENI IHFSNMAGAS 1440 SVGPAFTSNY QQSKLADPIQ SKPKPLTPKD LLPVQFSSPL PDPTSICFEG IAAITTPSFK 1500 DHGSIVSIAS GAKDVNMFPT FKDQSGNRHD ALFHNVDGYM QHKRNNHLKT EVSILPETTI 1560 SCNAGISQSD QFAVPKFQNG RSSSLGLSDA NLGVLSTGNR EEVREGLFRP SSVKASAGNE 1620 EQQKRPGDVK LFGQILSHQS SVQSSGSSVY GSKNKPPSPK VEKSASRLLS NSREPLIYSS 1680 RPPMIANLGL EERAMRGYDH LDGRAMHSEL PSPKVEKSAS TRLLSNSRER LIYSSGPPII 1740 ADLGLDASAT RSYAHLDGRS MQPEPMVMVA KCQRSSAGVP VYSTKNGALS VFAEFQQPSM 1800 QSHPPDHKLM EIADLHKRNG MDLISGFQQP GRLGGPGVLV SGVSDPVAAL KAQYGPGSKM 1860 LSNDVDTWKD IGSR

Sequence ? help Back to Top

Protein Sequence Length: 1874 aa Download sequence Send to blast

MASTPAAGSA GDERRRWRRG RGGFGFGAGG RRPPRGREDA NQLGLTAWVG LRLLSIPPSV  60
FLPSEPKAIL SPLSLSLSSP LLLPPPPPPS SQISAGLLLR LRLPDVVFSA PPGVAACTVA  120
TSACIDDDHH SHLPPPLKEG REVGFSCLCD CGGATAADQD RCRLCRRRVG SDRRKRSWLR  180
RAYVICGGGR SCGRRRPRRR GCLPRRRIGG TSCTGTAAGM TAAAASPSHR QPPRRRVGAT  240
RRTTRLRRRL PSATTPGPHL AARRRRPPQG GGSYDRSYPD ESLGYTPSRS ERYWLEEDGY  300
KGFSRYGGGG GGGGGSRRDG RDMRGSYRRS PFRGYGSDFS RNHQEHLPPP LRRSPLRSIA  360
VSTSYDPSGD RADRGDRDHH HRVTPWRPVR RRESRSDAGD AAGAGAVPVG QAAAAPVSEK  420
DVSAQSLAVA APQVSEEEAP RKKPRLGWGQ GLAKYEKQKV QGPADSAEAV VEGSPTATEQ  480
KTATQTPASE PCTSPVVAAP SLSVAAPSPA PPCKSPVPEE KSCEVTNTVA ESNKNIPEAD  540
VQACNNEIPI TLDQLEGDPI DSLAKVLSEL VQHEDSCSGD SKRLTNSSKL LLLKESISKE  600
LEKTELEIDS LEGELKSVNA EARKRTLRDP PATVTYAQDP SPSPVKEQGE LTPSPNISME  660
QDADVKVVDP MEVETAQAHN PKAVSSEESV ACPEIAQGQV SAAADVVPCD ASRKIGPAID  720
VDNEQHEVDP CHDNLNAMKE DGSIGLTTKP CSSHDANLFH QITAVNMNEA KDASELLFKH  780
VPADQSHLDL LTLNHLSSRE KDDLIIKRKH AILKNRQRFK EQILTFKFRV LRHLWKEDVR  840
LLSVRKQRSK SHKRTDQSNR AAQSGSQRQR SSNRSRLSVP AGNINTFPIT EMSGVANKLF  900
SEFQLKRCRN YLKMPTQIID EKEKVGARFV SKNGLVEDPI LVEKERALVN PWTREEKEVF  960
MEKLATFGKD FSKISSFLKH KTTADCIEFY YKHHKSESFR EVKKLLDLRQ QQQPASNYLG  1020
AISGKKWNPE ANAASLDMLG VATEVAAQGL EYANEVKKNS AKSIMRNACG ADNSSKGSED  1080
CVGDVSLHER ESVAADVLAG ICGTLSPEGM GSCITSSADP GQKMGISRME HLLTPEADKN  1140
FDDDGTVSDQ ECEVDIVDWN DDEKSIFIEA ISNYGKDFAQ ISSCVKSKSF EQCKVFFSKA  1200
RKSLGLDMIR QSAADAGFPT GDGNGGRSGT DGACVAEMDS AICSAQSCPE MEIDACPVSD  1260
GDIQGHHPLS DIVSEPAEAD KSNVPDIDVN VEESAVPDID VNVEEGGSKA EKNHNIIVDH  1320
KQLCEDTRQT SCAHIDINCP ESTDTLQDIE DVAPVNMHGN DATVEQAVAA HVDIRSSLHP  1380
VEVVESSRVS EGNSMDLSSK GRSHGSEFGK GGKSTLSVCL PANGVSKENI IHFSNMAGAS  1440
SVGPAFTSNY QQSKLADPIQ SKPKPLTPKD LLPVQFSSPL PDPTSICFEG IAAITTPSFK  1500
DHGSIVSIAS GAKDVNMFPT FKDQSGNRHD ALFHNVDGYM QHKRNNHLKT EVSILPETTI  1560
SCNAGISQSD QFAVPKFQNG RSSSLGLSDA NLGVLSTGNR EEVREGLFRP SSVKASAGNE  1620
EQQKRPGDVK LFGQILSHQS SVQSSGSSVY GSKNKPPSPK VEKSASRLLS NSREPLIYSS  1680
RPPMIANLGL EERAMRGYDH LDGRAMHSEL PSPKVEKSAS TRLLSNSRER LIYSSGPPII  1740
ADLGLDASAT RSYAHLDGRS MQPEPMVMVA KCQRSSAGVP VYSTKNGALS VFAEFQQPSM  1800
QSHPPDHKLM EIADLHKRNG MDLISGFQQP GRLGGPGVLV SGVSDPVAAL KAQYGPGSKM  1860
LSNDVDTWKD IGSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	2e-15	909	1000	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	2e-15	909	1000	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	206	RRRPRRRGCLPRRR
2	194	199	RRPRRR
3	246	265	RRRLPSATTPGPHLAARRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G01720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070653	0.0	AK070653.1 Oryza sativa Japonica Group cDNA clone:J023055D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639126.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639127.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639128.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639129.1	0.0	uncharacterized protein LOC9268524
TrEMBL	A0A0D9WCA2	0.0	A0A0D9WCA2_9ORYZ; Uncharacterized protein
STRING	LPERR05G01720.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	5e-80	MYB family protein