PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G01920.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 248aa    MW: 27824.3 Da    PI: 7.1742
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G01920.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.2e-28107165259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+v+++++d ++++itY+++Hnh+
  LPERR05G01920.2 107 ADSWSWRKYGQKPIKGSPHPRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 165
                      69************************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-3299165IPR003657WRKY domain
SuperFamilySSF1182901.31E-24101165IPR003657WRKY domain
SMARTSM007744.2E-33106166IPR003657WRKY domain
PfamPF031067.4E-24108165IPR003657WRKY domain
PROSITE profilePS5081128.334108167IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MVVRSETVTL HIQLCIQLLE SEKQRKEKES EMTKMSSMRA DGSVPKRRYL LSSTYPCWFA  60
AGGATSSLVI VLCCHCSYLY CYCCRRQDVQ KVVVSLKDHK VEQGPPADSW SWRKYGQKPI  120
KGSPHPRGYY KCSSYRGCPA RKQVDKCRND ASLLIITYTS DHNHDNSYAT NSVQEHEHHS  180
DRSDAGAALS NGMSLAEVTV SSSKLSEEES CDFFDELEEL QAPASASPLP SLSFMVQESN  240
FSDARTLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-171081651672WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G01920.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364661e-151CT836466.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038N04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639937.11e-100probable WRKY transcription factor 69
TrEMBLA0A0D9WCC70.0A0A0D9WCC7_9ORYZ; Uncharacterized protein
STRINGLPERR05G01920.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149121821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-34WRKY DNA-binding protein 65