PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G02290.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 428aa    MW: 45141.5 Da    PI: 6.3937
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G02290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY759.1e-242232731059
                      EEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  10 YGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      YGqK+ kg+++pr+YYrCt+a +Cpv+k+v+r+aed +++ +tYeg+H h+
  LPERR05G02290.1 223 YGQKMAKGNPCPRAYYRCTMAsQCPVRKQVQRCAEDRTILMTTYEGTHSHP 273
                      ********************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.06E-20222275IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-23223275IPR003657WRKY domain
SMARTSM007747.5E-22223274IPR003657WRKY domain
PROSITE profilePS5081122.504223275IPR003657WRKY domain
PfamPF031061.9E-19223273IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MNMMVQKQHE EEEERSFFGR EIKEVDFFSA AGAGGRSGAD DGDVAIRADG VSHAGFMVST  60
ALDLLTAVND GDEDQIKKGE SNDHHQSKTA DATTVEGELR QAGEENRRLR RRLEELTTSY  120
GALYHQLVQA QQQQQHNKQA MAGMQLLDAL AASPASHRRL AADGDGDRTD SDGGGADEKP  180
APATLTQLTA PENNAGEQAA AAEMAPCRKA RVSVRARSEA PMYGQKMAKG NPCPRAYYRC  240
TMASQCPVRK QVQRCAEDRT ILMTTYEGTH SHPLPAAAAA MASTTSAAAQ MLLSGPAPLS  300
RAPFFPYPTL SASAPFPSIT LDLTNPLATS AAGLQLHRGP HKITMYGSAG AGGFQFLPGS  360
HHRAVFPPPP AMETMTAAIA RDPNFTTALA AAISSIMAGG GGVALAQAPV QETSTAAPTT  420
TPPPLEHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-142232752374WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G02290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0934901e-49AC093490.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1127_B08, complete sequence.
GenBankAP0149611e-49AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-49CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638125.11e-134probable WRKY transcription factor 47 isoform X2
TrEMBLA0A0D9WCI00.0A0A0D9WCI0_9ORYZ; Uncharacterized protein
STRINGLPERR05G02290.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-45WRKY family protein