PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G03680.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 90aa    MW: 10063.7 Da    PI: 9.8843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G03680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.0002327701755
                     HHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHHHH CS
              HLH 17 NsafeeLrellPkas.....kapskKlsKaeiLekAveYIksLq 55
                     ++++e Lr+l+P +        +++ l+  e L +A +YI  Lq
  LPERR05G03680.1 27 KERMEALRSLVPGSGeaaaeIDGGRQLDAEELLFRAADYIARLQ 70
                     6789*********7779995555555****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-71684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-52785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MTVTKAAVAP RISPARRKRM AKNAESKERM EALRSLVPGS GEAAAEIDGG RQLDAEELLF  60
RAADYIARLQ VQVKVMQFMV DVLEHTKDFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G03680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0874253e-34AC087425.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0676G05, complete sequence.
GenBankAP0149613e-34AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-34CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165541.19e-19uncharacterized protein LOC109751039
TrEMBLA0A0D9WD255e-58A0A0D9WD25_9ORYZ; Uncharacterized protein
STRINGLPERR05G03680.18e-59(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126