PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G03900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 212aa    MW: 23956.5 Da    PI: 7.6294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G03900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.63e-132064147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW+ eE+ ++++a  ++G + Wk+I   +  ++t+ q++s+ qk+
  LPERR05G03900.1 20 RERWSDEEHNRFLHALMMFGRD-WKRIELFVA-TKTAIQIRSHAQKH 64
                     78******************77.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-151470IPR009057Homeodomain-like
PROSITE profilePS5129416.3041569IPR017930Myb domain
TIGRFAMsTIGR015571.2E-151967IPR006447Myb domain, plants
SMARTSM007171.5E-91967IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-62064IPR009057Homeodomain-like
PfamPF002491.6E-102064IPR001005SANT/Myb domain
CDDcd001677.71E-82265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTAMAGKKKR RKPYTITRPR ERWSDEEHNR FLHALMMFGR DWKRIELFVA TKTAIQIRSH  60
AQKHFLKARK FGLAGGLPPP LHRRRAELPP PSWGVQQNMA DWMPTSYSPE DSFSPLFPIS  120
DDCSFVEAPN CSGSGESWIT SDVAFLQDET IMLPISPDDL GFAEVYKFVG DVFGSGEPRP  180
VEALLWRLQG LDAAISETIL LVLKNLEANL VA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610KKKRR
2611KKKRRK
3711KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G03900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638954.11e-102protein REVEILLE 8
TrEMBLA0A0D9WD541e-156A0A0D9WD54_9ORYZ; Uncharacterized protein
STRINGLPERR05G03900.21e-121(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.12e-39MYB_related family protein