PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G03980.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 252aa    MW: 27878.7 Da    PI: 9.5123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G03980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.3e-1160104554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h+e+ErrRR+riN  +++Lr++lP a     k ++Ka+ L  +v  +k+L
  LPERR05G03980.1  60 HSEAERRRRERINAHLDTLRRILPDA-----KQMDKATLLATVVSQVKHL 104
                      9*************************.....67**********9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.35455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1259109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-960104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1160106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-1061110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.386148224IPR002912ACT domain
Gene3DG3DSA:3.30.70.2603.3E-5149211No hitNo description
SuperFamilySSF550211.03E-5150212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSTCQQQQQF LHPGGYDLPS VYSGTALLPL QGGFAPEPPP PPSSLSGRSA TDQVTAMRIH  60
SEAERRRRER INAHLDTLRR ILPDAKQMDK ATLLATVVSQ VKHLKKFATH ASTASASPIP  120
PEANEVAVQC HYTGDDDPSN TCRTVYVHAT VGCDDRPGLL ADIAGAFRRL RLRPLSADMS  180
CLGGRTRHVF VLCREGEELV EVRHLKESVR QALAKVAFPE MMYSSSSRSS RSKRQRVLES  240
RFSTTVVYSH GW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G03980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638377.19e-85putative transcription factor bHLH107
RefseqXP_015638378.19e-85putative transcription factor bHLH107
RefseqXP_015638379.19e-85putative transcription factor bHLH107
TrEMBLA0A0D9WD680.0A0A0D9WD68_9ORYZ; Uncharacterized protein
STRINGLPERR05G03980.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-23bHLH family protein