PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G04040.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family LBD
Protein Properties Length: 249aa    MW: 25895.2 Da    PI: 8.369
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G04040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.14e-40661661101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrr+Ca++C+++pyf   +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l++el
  LPERR05G04040.1  66 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILNLQQQVHALESEL 159
                      7********************************************************************************************* PP

           DUF260  95 allkeel 101
                      a++++++
  LPERR05G04040.1 160 AAVRAQI 166
                      **99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.44465166IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-4066163IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSTASDWQDH YEVGRKIIKR ESALSAADAA AASADDGRMM ARRSCSTPAA AAGAGPGSAA  60
VNTITPCAAC KLLRRRCAQE CPFSPYFSPL EPHKFASVHK VFGASNVSKM LLEVHESQRG  120
DAANSLVYEA NLRLRDPVYG CMGAILNLQQ QVHALESELA AVRAQIVSHK YRSSPATATT  180
VLPSSHASQL LAGRLPVAAA GTMGVTTATL PAVASASSST TTAAVYAAAA ASSSTDYSSI  240
TNENVPYFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-40511691114LOB family transfactor Ramosa2.1
5ly0_B4e-40511691114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G04040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881485.11e-111LOB domain-containing protein 15 isoform X1
SwissprotQ9AT614e-67LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A0D9WD760.0A0A0D9WD76_9ORYZ; Uncharacterized protein
STRINGLPERR05G04040.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.14e-65LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]