PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05170.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 351aa    MW: 38699.9 Da    PI: 9.9492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.41.1e-26411651128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                      lp+G+rF+Ptd+el+ e+L +kv++        ++++ + ik   +i++++P++Lp     +  e     ++++      +++ ++++ +W++t
  LPERR05G05170.1  41 LPAGVRFDPTDQELI-EHLDAKVKDGGsgahplIDEFIHtIKGEdGICYTHPENLP-----GWPEQALLPPAAS------KSTHVAAETRWHKT 122
                      799************.99******9997887774444444777756**********.....2233333444433......4455666778**** PP

              NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      gk++++++ +g+ +g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  LPERR05G05170.1 123 GKTRPIMV-RGQPKGCKKILVLYtnFGKKRKSEKTNWVMHQYHL 165
                      ********.999***********54479999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-3033184IPR003441NAC domain
PROSITE profilePS5100527.39241184IPR003441NAC domain
PfamPF023653.5E-1442165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MNSDVSGSLG TKPDDDHRSS RRCPSCGHDL DCNKTFDMAG LPAGVRFDPT DQELIEHLDA  60
KVKDGGSGAH PLIDEFIHTI KGEDGICYTH PENLPGWPEQ ALLPPAASKS THVAAETRWH  120
KTGKTRPIMV RGQPKGCKKI LVLYTNFGKK RKSEKTNWVM HQYHLGELED EKEGDLIVSK  180
VFYQTQTRSA VVAADLPVAR QGGLLHGSVA SSGAAMAMNV QRQQHQVLKQ ADGQLRPLPT  240
KKRLHEDVVA QVRVNHGGEK RDHRYMPGQR HFSLNLKATP VPTTSSTSSE RLSQVSTLTT  300
SIERHNPLIP VVMGKQLHSP VRQFQSEHLH VGKRFNSSTP KGRLASATLA S
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G05170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1307306e-91AC130730.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0681D04, complete sequence.
GenBankAC1324866e-91AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBankAK2422276e-91AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence.
GenBankAP0149616e-91AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-91CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankJQ0880966e-91JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637950.11e-146NAC domain-containing protein 75 isoform X2
TrEMBLA0A0D9WDM00.0A0A0D9WDM0_9ORYZ; Uncharacterized protein
STRINGLPERR05G05170.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.19e-66NAC domain containing protein 75