PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05650.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 148aa    MW: 16690.6 Da    PI: 7.0221
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS704.5e-22191471133
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+ L++c  a+++gd  ++   L+  +e+    p+   + R+ + f+ AL+++l+ + ++l+  lpp   +    +++   ++ f+ev P lk
  LPERR05G05650.1  19 LVNHLVTCTFAIQDGDYIAVAGSLSDAREIltKIPTHVGIGRVLTIFADALSEQLFLTFPNLA--LPPPLPH----TKQHDLFHGFYEVGPHLK 106
                      5789*************************976778889*******************777776..4444443....445566788********* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133
                      f h++aN+aIl+a+e++  vH+iDf ++  +QW ++++ +a
  LPERR05G05650.1 107 FPHFIANRAILKAFESCGIVHVIDFALMDDVQWQPIIKVMA 147
                      ************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.5651148IPR005202Transcription factor GRAS
PfamPF035141.5E-1919147IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MQIEVVRRWH AIEKVTMRLV NHLVTCTFAI QDGDYIAVAG SLSDAREILT KIPTHVGIGR  60
VLTIFADALS EQLFLTFPNL ALPPPLPHTK QHDLFHGFYE VGPHLKFPHF IANRAILKAF  120
ESCGIVHVID FALMDDVQWQ PIIKVMAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G05650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.12e-50DELLA protein SLR1
TrEMBLA0A0D9WDS81e-105A0A0D9WDS8_9ORYZ; Uncharacterized protein
STRINGLPERR05G05650.11e-105(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-19GRAS family protein