PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 155aa    MW: 17209.7 Da    PI: 8.7582
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS78.81e-2418154193329
             GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.. 279
                       L++ p Ea+a+n+v+qlhrll +++++       ++ +vL+l+ sl+Pk       eadhn+ s+lerf ++l yy+a+fdslea  +r+s  
  LPERR05G05660.1  18 VLHTIPSEAIAINVVIQLHRLLVNQGTTMAvsssvPIVDVLDLITSLNPK-------EADHNKLSLLERFNNSLFYYAAMFDSLEAA-SRTSea 103
                      588999****************665554433344567789*********7.......***************************888.566634 PP

             GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                       + ++  +r++ + +  n v++eg++ ++rh+ + +W er+++aG+++vp 
  LPERR05G05660.1 104 mSPATRSSRHYCRGRSANTVSHEGSSCVQRHKLMTRWMERIQRAGLTQVPH 154
                      566788899999999*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.1951155IPR005202Transcription factor GRAS
PfamPF035143.5E-2218154IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSFVTWGFPS PSLQGLAVLH TIPSEAIAIN VVIQLHRLLV NQGTTMAVSS SVPIVDVLDL  60
ITSLNPKEAD HNKLSLLERF NNSLFYYAAM FDSLEAASRT SEAMSPATRS SRHYCRGRSA  120
NTVSHEGSSC VQRHKLMTRW MERIQRAGLT QVPHD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G05660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.14e-41DELLA protein SLR1
TrEMBLA0A0D9WDS91e-111A0A0D9WDS9_9ORYZ; Uncharacterized protein
STRINGLPERR05G05660.11e-112(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-17RGA-like 2