PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G06470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 486aa    MW: 52864.1 Da    PI: 5.2548
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G06470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.95e-108724471373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+ L++cA a+++gd ++a+  L+  +e+    p+   + R+ + ft+AL++r++         l++++ ++   +e+   ++ f+e+ P l+
  LPERR05G06470.1  72 LVDHLVTCAGAIQAGDYAAATGSLSDAREIltKIPTHVGIGRVFTLFTNALSERMFP------VFLNSESLPPPPCAEQHELFRGFYEAGPHLR 159
                      5789*************************977778889******************9......223333333334667778899********** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+h++aN aIlea+eg+++vH+iD+ i+ G+QW +L+++La Rp+gpp lR+Tg+g+ + g++++l+ +g rL++fA++++vpf f+ ++++++
  LPERR05G06470.1 160 FAHFMANMAILEAFEGCDAVHVIDLAIMDGVQWQSLIETLAVRPGGPPFLRLTGIGPLSVGDHDKLRDMGIRLTEFARSCNVPFTFRGIAEDQI 253
                      *********************************************************9999***************************9999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldes.vsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      ++l++++L++ pgE++aVn vlqlhrll ++ +++ +    ++d+vL+l+ sl+Pkv++vveqeadhn++s+lerf+++l yysa+fdslea  
  LPERR05G06470.1 254 DSLRPWMLETVPGETIAVNAVLQLHRLLVDQdAAVVEsspaPIDSVLNLFTSLNPKVFTVVEQEADHNKSSLLERFSNSLFYYSAMFDSLEAAS 347
                      **************************99443122222355699***********************************************6554 PP

             GRAS 276 pres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                       ++s  +  + + +++l+ ei +++++eg++r+erhe +  W+er+++aG++++p + +   qa   ++++++ g+ v+e+ g l+l+W++++L
  LPERR05G06470.1 348 LHASgdNVCNPLAEAFLEGEINDIISHEGSSRVERHEPMTCWKERMQRAGLTQIPHGRNKLWQAGKHIHEFSGTGFGVQENGGFLTLTWHNQKL 441
                      4444346667788888****************************************************************************** PP

             GRAS 368 vsvSaW 373
                      +++S+W
  LPERR05G06470.1 442 YTASVW 447
                      ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.79846428IPR005202Transcription factor GRAS
PfamPF035141.7E-10572447IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAHFSGFTNW SPMDVATAAV VPAKEINGNS SGEVAYVPLP PHMVVPPSSV PSTMQIEAAR  60
GWQGMEKAGM LLVDHLVTCA GAIQAGDYAA ATGSLSDARE ILTKIPTHVG IGRVFTLFTN  120
ALSERMFPVF LNSESLPPPP CAEQHELFRG FYEAGPHLRF AHFMANMAIL EAFEGCDAVH  180
VIDLAIMDGV QWQSLIETLA VRPGGPPFLR LTGIGPLSVG DHDKLRDMGI RLTEFARSCN  240
VPFTFRGIAE DQIDSLRPWM LETVPGETIA VNAVLQLHRL LVDQDAAVVE SSPAPIDSVL  300
NLFTSLNPKV FTVVEQEADH NKSSLLERFS NSLFYYSAMF DSLEAASLHA SGDNVCNPLA  360
EAFLEGEIND IISHEGSSRV ERHEPMTCWK ERMQRAGLTQ IPHGRNKLWQ AGKHIHEFSG  420
TGFGVQENGG FLTLTWHNQK LYTASVWHLS VTGPRVVSGG STVMDLMERE NSSGGGSGQC  480
VFIGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-486344710378Protein SCARECROW
5b3h_A2e-48634479377Protein SCARECROW
5b3h_D2e-48634479377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G06470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.10.0DELLA protein SLR1
TrEMBLA0A0D9WE310.0A0A0D9WE31_9ORYZ; Uncharacterized protein
STRINGLPERR05G06470.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-81RGA-like 2