PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G06500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 184aa    MW: 19288.1 Da    PI: 5.5875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G06500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000194466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ F++   L  H++ H
  LPERR05G06500.1 44 YECVFCKRGFTTAQALGGHMNIH 66
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.35E-64270No hitNo description
PROSITE profilePS5015710.994471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDDHAGALDS IVDEAASSPA AAAKDEEDDA APAPATAAST RPYYECVFCK RGFTTAQALG  60
GHMNIHRRDR AKPPPPPREA ITTVSRNVDC YSQYRHLAFP SPASGGGGFA MYYGSVSGSV  120
DAGPRELSLF DAAATTTARD LGVGRGGGGD EQRGTAGSEQ HAGELPAEKD QVDLELRLGR  180
RTKH
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G06500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1454774e-38AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBankAP0149614e-38AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805746.15e-40uncharacterized protein LOC112884551
TrEMBLA0A0D9WE331e-130A0A0D9WE33_9ORYZ; Uncharacterized protein
STRINGLPERR05G06500.11e-131(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.11e-14C2H2 family protein