PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G09260.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 527aa    MW: 56327.6 Da    PI: 7.9696
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G09260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS250.85.1e-771345251374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPil 91 
                      lv+ L +cAea+       ++a L+ +  laspdgd++qR+aa f+ ALa+   + + ++++al +++ +++      e++ a++ f +v+P+l
  LPERR05G09260.1 134 LVRHLRRCAEALVMARSVDVDAELTSIMRLASPDGDAVQRMAAAFAAALARVAISPWRGVSAALFATDGRDDGtavALEAAVARQNFLKVCPLL 227
                      578899*********************************************************97777765555656677777788******** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      +++ ++aN+ I ea++ ++ +Hi+D++  +++QW+ L+ a++sR +g ps+R+T+v +   +  +++++ +  L+  A++lg+pfe +v v ++
  LPERR05G09260.1 228 RLAAVAANELIIEATKDDKLIHIVDLGGVNPGQWVELMVAFTSRYQGRPSVRLTVVIK---EPGQSYSQAATILTGEATRLGLPFELHV-VDSS 317
                      *******************************************************999...58999**********************9.799* PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrll..............desvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                      l++l+l++L v+++ al+V + lqlhrl               + +v+++s + d++L+ + +lsP +++v+e+ea+h  ++F erf++al yy
  LPERR05G09260.1 318 LDELKLDTLGVRSDHALIVISTLQLHRLGtgtsymavapgiasSLPVAMSSsTVDNLLSGLHRLSPSLFIVTENEANHFWPRFRERFTSALGYY 411
                      *****************************************885555555556789************************************** PP

             GRAS 265 salfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek.aakqaklllrkvk..sdgyrveee 354
                        lf s+ ea++  +  er+ vEr++l++ei++++ace+  r  rhe+ + W  r+++aGF+  p++   aa  ++++ ++ +  s+ y v e 
  LPERR05G09260.1 412 EQLFRSMeEASVLCQPAERKAVERHILKEEIKDIIACENGPRWTRHEQSGMWIGRIDAAGFELWPMGIIlAAGRIRSVASQQYggSHRYGVTEG 505
                      *******999999999***********************************************9999761445566665554436677****** PP

             GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                      +g+l+l  +++p++ vSaWr
  LPERR05G09260.1 506 NGWLILNRMNKPIFCVSAWR 525
                      *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.952108502IPR005202Transcription factor GRAS
PfamPF035141.8E-74134525IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEKGSSSSAS ANANNLTLGQ AMDMPVKTIQ LFGTHLHIPA TSTATATAPA AANTGSATAL  60
SLNAFAGLTQ GQGNLSLSLQ PAGVLAPTMA PPTMLEPLAM GPAAPVAQNT ALATVANAPA  120
WQRNNLAAER ATVLVRHLRR CAEALVMARS VDVDAELTSI MRLASPDGDA VQRMAAAFAA  180
ALARVAISPW RGVSAALFAT DGRDDGTAVA LEAAVARQNF LKVCPLLRLA AVAANELIIE  240
ATKDDKLIHI VDLGGVNPGQ WVELMVAFTS RYQGRPSVRL TVVIKEPGQS YSQAATILTG  300
EATRLGLPFE LHVVDSSLDE LKLDTLGVRS DHALIVISTL QLHRLGTGTS YMAVAPGIAS  360
SLPVAMSSST VDNLLSGLHR LSPSLFIVTE NEANHFWPRF RERFTSALGY YEQLFRSMEE  420
ASVLCQPAER KAVERHILKE EIKDIIACEN GPRWTRHEQS GMWIGRIDAA GFELWPMGII  480
LAAGRIRSVA SQQYGGSHRY GVTEGNGWLI LNRMNKPIFC VSAWRSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2815552524375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G09260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692579.11e-155PREDICTED: scarecrow-like protein 3
TrEMBLA0A0D9WF390.0A0A0D9WF39_9ORYZ; Uncharacterized protein
STRINGLPERR05G09260.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169421011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-50scarecrow-like 3