PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G11480.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GRAS

Protein Properties

Length: 113aa MW: 12837.8 Da PI: 4.3983

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G11480.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	22.4	1.3e-07	47	95	280	328
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328 e++++E+ +l+++i++++a + + ++he l++W r+++ GF ++ LPERR05G11480.1 47 VEQKSLEKYVLKEKIEDIIASNDMSWWAQHELLGRWIVRMGTTGFVFLT 95 57899****************************************8665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.5E-5	47	95	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MVDNLLHGFH LLSPRLYCEQ LFISLEESSV LCQPAEQKES SVLCQPVEQK SLEKYVLKEK 60 IEDIIASNDM SWWAQHELLG RWIVRMGTTG FVFLTTSIIL VAVQLLGGDV DTE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G11480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9WFX4	4e-77	A0A0D9WFX4_9ORYZ; Uncharacterized protein
STRING	LPERR05G11480.1	6e-78	(Leersia perrieri)