PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G11770.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

SRS

Protein Properties

Length: 312aa MW: 31681.1 Da PI: 8.5019

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G11770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.6	1.9e-65	91	253	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstk 90 +sg+a+C++CGnqakkdC+h+RCRtCCksrgfdCathv+stWvpaa+rrerq+ ++a ++ ++s + ++k++r l ++++++s+t+ LPERR05G11770.1 91 GSGGATCHECGNQAKKDCVHHRCRTCCKSRGFDCATHVRSTWVPAARRRERQHLATAGAAAGNSSPpptsiPTTTTKKPRLLG-SQTTTTSRTS 183 57899********************************************88777665555444466555556666666652.2222333332 PP DUF702 91 lssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + s+++++tss lP++v+++avfrcvrv+svddg++e+aYq+avsi+Gh+f+G+LydqG+++ LPERR05G11770.1 184 T----SPRSFDTSSshqvasfrdgLPRQVRAPAVFRCVRVTSVDDGDDEFAYQAAVSINGHMFRGFLYDQGADD 253 2....2223333333334558889*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.3E-61	94	252	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.7E-26	96	138	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.4E-26	204	250	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MVLVAPTASY HHHRSAAAGG GEPVFPLLGT GQCAIDAADK SPGAASAIHF WQSPTAAAAA 60 AAGGGAGMSG DRKPIPMLDY GGIGGVSSGS GSGGATCHEC GNQAKKDCVH HRCRTCCKSR 120 GFDCATHVRS TWVPAARRRE RQHLATAGAA AGNSSPPPTS IPTTTTKKPR LLGSQTTTTS 180 RTSTSPRSFD TSSSHQVASF RDGLPRQVRA PAVFRCVRVT SVDDGDDEFA YQAAVSINGH 240 MFRGFLYDQG ADDGRGGSND EPSHGAAAVP SISDLHLGSA SAAAAAAVPP HLYSGGSGPL 300 ILGGLGYGNT MN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G11770.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104710	1e-70	AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBank	AC136219	1e-70	AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBank	AP014961	1e-70	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-70	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881073.1	1e-129	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	3e-59	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0D9WG07	0.0	A0A0D9WG07_9ORYZ; Uncharacterized protein
STRING	LPERR05G11770.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	6e-46	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]