PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G12270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARR-B
Protein Properties Length: 902aa    MW: 98670 Da    PI: 6.1362
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G12270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like43.47.4e-14264316254
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYR 54 
                      +r +W+   H+ F +a +qL  +++A Pk+i+elm+ +g+  t+++v SHLQk+R
  LPERR05G12270.1 264 ARFNWNRASHSVFFDAYNQL--KDEASPKRIKELMEREGIfvTVAQVSSHLQKFR 316
                      799*****************..*****************6669***********9 PP
2Response_reg62.22.7e-21241301108
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+vdD+ + +e l+ +l  +gy +v+  +++eeal+ ++++    +D++++D+ mpgmdG++ll+  r +    p+i++++ ++  ++ +a+ 
  LPERR05G12270.1  24 VLVVDDDAACLEDLKLLLLLAGY-SVTGKTTAEEALQEVERNSegyFDVVMTDVHMPGMDGFDLLRGVRGRF---PVIMFSDAEDVLTMMRAVM 113
                      89*********************.999999*********8888899************************87...******************* PP

                      TTESEEEESS--HHHHH CS
     Response_reg  92 aGakdflsKpfdpeelv 108
                       Ga d+ +Kp+  +++ 
  LPERR05G12270.1 114 DGACDYMVKPVTSQAIK 130
                      **********9988775 PP
3Response_reg56.41.7e-194865911107
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+vdD+ + +e l+ +l  +gy +v+  +++eeal+ ++++    +D++++ + mpgmdG++ll+  r +    p+i+++  ++  ++ +a+ 
  LPERR05G12270.1 486 VLVVDDDAACLEELKLLLLLAGY-SVTGKTTAEEALQEVERNSegyFDVVMTNVHMPGMDGFDLLRGVRGRF---PVIMFSEGDDVLTMMRAVM 575
                      89*********************.999999*********8888899************************87...******************* PP

                      TTESEEEESS--HHHH CS
     Response_reg  92 aGakdflsKpfdpeel 107
                       Ga d+ +Kp+   ++
  LPERR05G12270.1 576 DGACDYMVKPVTSGAI 591
                      **********987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.25E-2921143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-3021141No hitNo description
SMARTSM004484.2E-2622133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011036.10623137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-1824130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.94E-1925130No hitNo description
Gene3DG3DSA:1.10.10.601.1E-12261318IPR009057Homeodomain-like
SuperFamilySSF466896.63E-7262320IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-10264316IPR006447Myb domain, plants
Gene3DG3DSA:3.40.50.23001.3E-29482606No hitNo description
SuperFamilySSF521721.85E-27482604IPR011006CheY-like superfamily
SMARTSM004481.5E-23484595IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.253485599IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.0E-17486592IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.43E-17487587No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MAENGLVPPG RVLPAAGFLG RLHVLVVDDD AACLEDLKLL LLLAGYSVTG KTTAEEALQE  60
VERNSEGYFD VVMTDVHMPG MDGFDLLRGV RGRFPVIMFS DAEDVLTMMR AVMDGACDYM  120
VKPVTSQAIK SIWMHVMRRR LSVTHPQPSP LPDNRFAPPA LPAGISRGDG QVAALLPQPP  180
APAPAPVGNT GSDVQEAALA QLLAPAENGR GDVQEAAKAA VVAVAGSSRR GGHGKRASKK  240
RGSPVVLSDE SSNNCEPTGK KARARFNWNR ASHSVFFDAY NQLKDEASPK RIKELMEREG  300
IFVTVAQVSS HLQKFRRWLE TASNQEEAVR SPNNILSKSQ DTRHYQWSRQ SIISEGPLAG  360
MVSSRPVHPM AASKSHLTVQ SNYVGLGCTQ IEDFISNHRR SEETRQPIEQ SQSCATNYLR  420
VINDSNHMTH EMSAPRAAPA PLGYDNNVDW PEFGSLDDLQ DNDMLMNSLL NGHLQQDDEN  480
QEMLHVLVVD DDAACLEELK LLLLLAGYSV TGKTTAEEAL QEVERNSEGY FDVVMTNVHM  540
PGMDGFDLLR GVRGRFPVIM FSEGDDVLTM MRAVMDGACD YMVKPVTSGA IKSIWMHVMR  600
RRLSATHPQV SPLPDNRLAR PALPAGSSRG DGQVAALLPQ PLAPALAPAP AGNTGGDVQE  660
AALAQPLAPA ENRRGDVREA AVAVAESSHR GGHGKRASKK RGAPVVLSDE SSNNCEPTGK  720
KAWARFNWNT VSHSVFFDAY NQLKDEAIRS PNNILSKSQH TGHYQWKRQS VITEGPLAGM  780
VSSRPVHPMA ASKSHLTVQS NYVGLGCTQI ENFISNHRRS EENKQPMEQN QSCATNYLRV  840
INDSNHMTHE ISAPRTAPAP LGYDNNVDWP EFGSLDDLQD NDMLMNSLLN GHLQQDDENQ  900
EM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G12270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692588.11e-115PREDICTED: two-component response regulator ORR27-like
SwissprotQ75HW21e-108ORR27_ORYSJ; Two-component response regulator ORR27
TrEMBLA0A0D9WG740.0A0A0D9WG74_9ORYZ; Uncharacterized protein
STRINGLPERR05G12270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159621113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-24response regulator 1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]