PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G12780.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 846aa    MW: 93105.6 Da    PI: 5.9117
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G12780.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.55e-35170245176
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      +Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  LPERR05G12780.2 170 RCQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 245
                      6************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-27165232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.581168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-33169248IPR004333Transcription factor, SBP-box
PfamPF031106.9E-27171245IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    Send to blast
MDAPSAGTSA GGGAAGDAGE PVWDWGNLLD FAIQDDDESL VLPWDGSIGI EADPTTEATL  60
TLPSAPPSSQ PVEAAAEAAP PPLTMQPEGS KRRVRKRDPR LVCPNYLAGR VPCACPEVDE  120
MAAALEVEDV ATDLLAGARK KSKSVGRGGG DAAAGGSGGG ASRGTPAEMR CQVPGCEADI  180
RELKGYHRRH RVCLRCAHAA AVMLDGVQKR YCQQCGKFHI LLDFDEDKRS CRRKLERHNK  240
RRRRKPDSKG ILEKDVDDQL DLSADGSGDV GSGDGELREE NMDGTASETL ETVLSNKVLD  300
KETPVGSEDV LSSPTCAQPS FQIDQSKSLV TFAASVEACL GAKQENNKLS NSPVHDTKST  360
YSSSCPTGRL SFKLYDWNPA EFPRRLRHQI FEWLSSMPVE LEGYIRPGCT ILTVFVAMPQ  420
HMWDKLSEDT ATLVKSLINA PNSLLLGKGA FFVHVNNMIF QVLKDGATLT SARLDVQSPR  480
IHYVYPSWFE TGKPVELILC GSSLDQPKFR SLLSFNGLYL KHDCCRIMPH ETFDYVESRE  540
SILDSQHEIF RINITQSKLD THGPAFVEVE NMFGLSNFVP ILVGSKDLCS ELEQIHDALC  600
GSSDKSSDPC DLRGFRQTGM SGFLIDIGWL IRKPSRDEFQ NLLSLPNIQR WICMMKFLIR  660
NNYINVLKII VNSLENIIGS EVLSNLEKGR LENHVTEFLG YVSQARNIVD SRPKYDKQTQ  720
IDTRWEVDNA PNQPNLGSSV PLVEESTSGE HDLHPTNEAS GEEENMPLVT KALPHRQCCH  780
PEITTRWLNP ASVGVFPGGA IRMRLATTVV IAAVLCFTAC IVLFHPNRVG VIAAPVKRYL  840
SRNYSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-37170250585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227245KRSCRRKLERHNKRRRRKP
2231243RRKLERHNKRRRR
3238245NKRRRRKP
4239244KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G12780.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1000570.0AK100057.1 Oryza sativa Japonica Group cDNA clone:J013158B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640052.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A0D9WGE50.0A0A0D9WGE5_9ORYZ; Uncharacterized protein
STRINGLPERR05G12780.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-149squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]