PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G14450.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 577aa MW: 63659.1 Da PI: 7.9507

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G14450.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.8e-11	267	296	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k e+r+++NReAAr+sR+RKka++++Le+ LPERR05G14450.2 267 AKTEKRLAQNREAARKSRLRKKAYVQQLET 296 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-6	264	340	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.243	266	310	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	267	297	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.4E-7	268	297	No hit	No description
SuperFamily	SSF57959	1.38E-6	268	311	No hit	No description
PROSITE pattern	PS00036	0	271	286	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.5E-28	349	423	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MYGPVAFQLR LGPCQKIAEV TACIFSGRSD HLAAAPPAVL AWPRPRPRPW PPPANPKKIH 60 SPLPPLAASE SMSPSRFYCQ SRSSRLDRSP GKCRIGLQYK SQTGEAKKLG LQPATAAYFG 120 ELEKALIHGT SAGAGVDPGM IQSDAYTESA GYIAARPPTL EIFPSWPMSH LQDPYSQNSQ 180 SVGSTTDSSS AQNTMSQAEL VSPVSVRSDS GHEQQQQEVL MVTIDDYNYK QGLGAAIATA 240 PSFQQHAGGL DMRKHGSTRK DGKLLDAKTE KRLAQNREAA RKSRLRKKAY VQQLETSRIR 300 LQQIEQELQR ARSQGLFPGG CSAPGDMSSG AVMFDMEYTR WLDDDSKCMA ELQGALQAQL 360 PDGNLGAIVE ECMLHYDELF HLRAVLANSD VFHLLTGMWA APAERCFLWM AGFRPSKILK 420 MLIPQLDPLT EQQLMGMCGL QQSSEQTEEA LAQGLHQLHQ SLADAVGAGP LNDGADVANY 480 TALMALALGR LENLESFYRQ ADNLRQETLH HMRRILTTRQ TARCFLSIGE YHRRLRALSS 540 LWASRPRENF ITAENVSPTG TEFQVIQQSQ QNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MYGPVAFQLR LGPCQKIAEV TACIFSGRSD HLAAAPPAVL AWPRPRPRPW PPPANPKKIH  60
SPLPPLAASE SMSPSRFYCQ SRSSRLDRSP GKCRIGLQYK SQTGEAKKLG LQPATAAYFG  120
ELEKALIHGT SAGAGVDPGM IQSDAYTESA GYIAARPPTL EIFPSWPMSH LQDPYSQNSQ  180
SVGSTTDSSS AQNTMSQAEL VSPVSVRSDS GHEQQQQEVL MVTIDDYNYK QGLGAAIATA  240
PSFQQHAGGL DMRKHGSTRK DGKLLDAKTE KRLAQNREAA RKSRLRKKAY VQQLETSRIR  300
LQQIEQELQR ARSQGLFPGG CSAPGDMSSG AVMFDMEYTR WLDDDSKCMA ELQGALQAQL  360
PDGNLGAIVE ECMLHYDELF HLRAVLANSD VFHLLTGMWA APAERCFLWM AGFRPSKILK  420
MLIPQLDPLT EQQLMGMCGL QQSSEQTEEA LAQGLHQLHQ SLADAVGAGP LNDGADVANY  480
TALMALALGR LENLESFYRQ ADNLRQETLH HMRRILTTRQ TARCFLSIGE YHRRLRALSS  540
LWASRPRENF ITAENVSPTG TEFQVIQQSQ QNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G14450.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639062.2	0.0	transcription factor TGAL5 isoform X6
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0D9WH30	0.0	A0A0D9WH30_9ORYZ; Uncharacterized protein
STRING	LPERR05G14450.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-136	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]