PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G14820.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 588aa    MW: 62921.2 Da    PI: 8.4685
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G14820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-103634001954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  LPERR05G14820.1 363 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 400
                      554458******************************98 PP
2BELL93.61.9e-30229298372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +e q +k++L+sl+e V+krYkqy++qlq++issFe+vagl +a+p++s+Al+++S+hF+ Lk +i +q+
  LPERR05G14820.1 229 AEQQWRKTRLISLMEDVCKRYKQYYQQLQAIISSFETVAGLSNAAPFASMALRTMSKHFKYLKGMILNQL 298
                      58899*************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-38159296IPR006563POX domain
PfamPF075262.8E-35164294IPR006563POX domain
PROSITE profilePS5007112.455341404IPR001356Homeobox domain
SMARTSM003891.4E-11344408IPR001356Homeobox domain
CDDcd000864.98E-14344405No hitNo description
SuperFamilySSF466894.28E-17346412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29347408IPR009057Homeodomain-like
PfamPF059205.2E-19361400IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MSSAAAAGGG GYGGGGGEQQ QQQQQHQLLF GQAAGQLYHV PQHSRREKLR FPADHPAETS  60
SPPQPQQPSW ALPPAFYSYA SSSSSSYSPH SPTTLAHAHM VVAHGGGMPP APQIPSQNFA  120
LSLSSASSNP PPPSTPRRQQ FGGGGGGGVA AAGPYGPFTG YAAVLGRSRF LGPAQKLLEE  180
ICDVGGGVRP APLGRPGSDE GLLDVDDAMD DAAGGSDSAA AEAVTVSGAE QQWRKTRLIS  240
LMEDVCKRYK QYYQQLQAII SSFETVAGLS NAAPFASMAL RTMSKHFKYL KGMILNQLRN  300
TSKGSSTKDA LGKEDTANFG LMGGGAGLLR GNNVNSFSQP HNIWRPQRGL PERAVSVLRA  360
WLFEHFLHPY PTDSDKQMLA KQTGLTRNQV SNWFINARVR LWKPMVEEIH NLEMRQMQKN  420
PSLDKNQISM QQHAQHSSDS SGKPCDPSNS LQGQSSSMTR NHSVSVSRHI EDGLSAGQMP  480
HDVSGQVSFA YNGLAAAHHN IAMSSHHQQP DHLIGTASNA GGVSLTLGLH QNNRAYIAEP  540
LPSALPLNLA HRFGLEEVSD AYVMGSFGGQ DRHFTKEIGG HLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17350407158Homeobox protein Meis1
4xrs_B4e-17350407158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G14820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654500.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLA0A0D9WH800.0A0A0D9WH80_9ORYZ; Uncharacterized protein
STRINGLPERR05G14820.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-73TALE family protein