PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G15220.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 198aa    MW: 21172 Da    PI: 9.7961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G15220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000375072123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg++F++   L  H  +H
  LPERR05G15220.1 50 FECRTCGRRFPTFQALGGHRASH 72
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.51E-74872No hitNo description
PfamPF139121.5E-114974IPR007087Zinc finger, C2H2
SMARTSM003550.195072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.9265077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SuperFamilySSF576675.51E-7102129No hitNo description
PfamPF139126.5E-9106131IPR007087Zinc finger, C2H2
SMARTSM003551.3107129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSKRQFGEME RSGVDTARVL TLLSQQQQRR QQRGEVGVVA RRHDERGRVF ECRTCGRRFP  60
TFQALGGHRA SHKRPRPLHA ARAPSPGDHP MLSTEVASGG GGRAHAHGCP VCGLEFAVGQ  120
ALGGHMRRHR AVAGEVVARV AARAKADDDD VVGDECTGGV CLDLNLTPSE NCVKCRHASL  180
GVAGNNSVKT TILLGCPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G15220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1172651e-38AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence.
GenBankAP0149611e-38AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-38CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881071.15e-69zinc finger protein ZAT12
TrEMBLA0A0D9WHC91e-139A0A0D9WHC9_9ORYZ; Uncharacterized protein
STRINGLPERR05G15220.11e-140(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.16e-24C2H2 family protein