PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G15940.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 551aa    MW: 58032.7 Da    PI: 6.722
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G15940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.3e-32214271260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK++kgse+prsYY+Ct++gCp+kkkve+s  d++v+ei+Y+g H h+k
  LPERR05G15940.1 214 DDGYNWRKYGQKQMKGSENPRSYYKCTFPGCPTKKKVEQSP-DGQVTEIVYKGAHSHPK 271
                      8****************************************.***************85 PP
2WRKY106.61.3e-33381439159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  LPERR05G15940.1 381 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASNDLRAVITTYEGKHNHD 439
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-28208272IPR003657WRKY domain
SuperFamilySSF1182901.96E-24211272IPR003657WRKY domain
SMARTSM007744.6E-35213271IPR003657WRKY domain
PROSITE profilePS5081123.112214272IPR003657WRKY domain
PfamPF031067.6E-25214270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-37366441IPR003657WRKY domain
SuperFamilySSF1182901.57E-29373441IPR003657WRKY domain
PROSITE profilePS5081138.526376441IPR003657WRKY domain
SMARTSM007741.4E-38381440IPR003657WRKY domain
PfamPF031065.2E-26382439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MTAAPASGSL LVNSRPVALS LASRSSFSSL LASPSSFKPM TPSSSLPLAA AATSPSSYFG  60
VSSGLLDSPI LLTPSLFPSP TIGGAFSWMT TAPENEVQGN GVKDEQKQYS DFTFQPTAST  120
VAGGTATTSS SFMQASMLMA PLDGNSYNGE QQQQQPWSYQ ELSMDAATRP ADFTTQFEGT  180
SSAATVDVLG NGGYNNQAPV AVAGFRQQSR RSSDDGYNWR KYGQKQMKGS ENPRSYYKCT  240
FPGCPTKKKV EQSPDGQVTE IVYKGAHSHP KPQPNARGRG GHGAGAGETY SADALSGATP  300
VATPENSSAA SFGADDDVNG VSSSLQAVVA TNGDGHEDEP DSKRWRGDGG EGGVSSSLVA  360
GNRTVREPRV VVQTMSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTA GCPVRKHVER  420
ASNDLRAVIT TYEGKHNHDV PAARGSAAAL YRAAPPQVIG GMRPMAPTSS YLQGGAGGYG  480
GAFVAAPTAQ HANGGGFGLS GAGFNDAIGV SSYSYTSQQQ QQQNDAMYYA SRAKDEPRDD  540
DMSFFEQPLL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36214442878Probable WRKY transcription factor 4
2lex_A1e-36214442878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G15940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981840.0DQ298184.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637836.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-130WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0D9WHN20.0A0A0D9WHN2_9ORYZ; Uncharacterized protein
STRINGLPERR05G15940.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-92WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]