PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G16840.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 332aa MW: 35550.9 Da PI: 6.8299

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G16840.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.3	2.2e-15	262	305	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++Lkk+ LPERR05G16840.1 262 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLKKQ 305 69***************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.6E-15	256	305	No hit	No description
SMART	SM00338	2.0E-10	258	314	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.702	260	305	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.9E-13	262	305	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-11	262	307	No hit	No description
CDD	cd14707	8.41E-25	262	309	No hit	No description
PROSITE pattern	PS00036	0	265	280	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MIQAMASHAG GSGSGGGRDA GSAQRMQSLG RQGSLYGLTL NEVQNQLGEP LLSMNLDELL 60 KSVFPDGVDP DGGGGGAAGQ SQPALGLQRE GSITMPPELS KKTVDEVWKG IQDVPKRGGE 120 EGGRRRRERQ PTLGEMTLED FLVKAGVVTD GYLKDSSDLV GNMDVVGGTA AAAGTSDLTA 180 GAQWLQRYQQ QALEPPHPSI AAPYMASHLV PQPLAIATGA VLDPIYSDGQ ITSPMLGALS 240 DPQTPGRKRG ATGEIADKIV ERRQKRMIKN RESAARSRAR KQAYTNELEN KVSRLEEENE 300 RLKKQKELDE ILNSAPPPEP KYQLRRTSSA AF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	129	GRRRRERQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G16840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063398	0.0	AK063398.1 Oryza sativa Japonica Group cDNA clone:001-114-H11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638733.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1
Swissprot	Q9LES3	1e-89	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A0D9WHZ2	0.0	A0A0D9WHZ2_9ORYZ; Uncharacterized protein
STRING	LPERR05G16840.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2707	38	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-80	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]