PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G17070.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family G2-like
Protein Properties Length: 256aa    MW: 28273 Da    PI: 6.9552
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G17070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.81.1e-324599155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl
  LPERR05G17070.1 45 KQRLRWTSDLHNRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 99
                     79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.91842102IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-3045100IPR009057Homeodomain-like
SuperFamilySSF466891.27E-164599IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-2545100IPR006447Myb domain, plants
PfamPF002492.6E-74798IPR001005SANT/Myb domain
PfamPF143792.2E-24131177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMYHAKKFSV PFGLQSAQSS EHMSNIGAFG GSNMSSPANP AGGGKQRLRW TSDLHNRFVD  60
AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA KYIPESPAEG SKDEKKDSSD  120
SLSNTDSAPG MQINEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQM IIEEQQKLGG  180
SIKVCEEQKL SHSPPSLDDY PDSLQPSPKK PKMDNLSPDS VRDVAQTEFE SHLIGPWDQD  240
LCGKNMCDAD PGLNKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2344102159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G17070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0619870.0AK061987.1 Oryza sativa Japonica Group cDNA clone:001-043-B07, full insert sequence.
GenBankAK0693060.0AK069306.1 Oryza sativa Japonica Group cDNA clone:J023012H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639152.11e-173myb family transcription factor PHL7
RefseqXP_015639153.11e-173myb family transcription factor PHL7
RefseqXP_015639154.11e-173myb family transcription factor PHL7
RefseqXP_015639155.11e-173myb family transcription factor PHL7
SwissprotQ9SJW09e-73PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0D9WI270.0A0A0D9WI27_9ORYZ; Uncharacterized protein
STRINGLPERR05G17070.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.19e-54G2-like family protein