PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G17470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 191aa    MW: 20100.6 Da    PI: 9.5018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G17470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-192069255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrd ++    ++r++lg+++t+ eAa a+++a+ +l+g
  LPERR05G17470.1 20 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTYDTPVEAALAYDRAAVALRG 69
                     6********.**********883....5**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.71E-271974No hitNo description
PfamPF008473.5E-122069IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-212077IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-292076IPR001471AP2/ERF domain
PROSITE profilePS5103221.4962077IPR001471AP2/ERF domain
SMARTSM003806.5E-322083IPR001471AP2/ERF domain
PRINTSPR003671.0E-92132IPR001471AP2/ERF domain
PRINTSPR003671.0E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MELDMGGGGA GCGGGRPEAH YRGVRKRPWG RYAAEIRDPW KKTRVWLGTY DTPVEAALAY  60
DRAAVALRGV KARTNFGGGG GGGPDHGNGN NGQLPQIHHQ HQRMHQQPPQ LPPLGAGGHF  120
GGLDISHPSP WHFVYFPARM HAMGPAVPGT PVVAASLPST TLELRTGPSA GDAAALPFDL  180
NEPPPSLLFG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-192076562ATERF1
3gcc_A1e-192076562ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G17470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085237e-86AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423937e-86AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149617e-86AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126137e-86CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8288807e-86CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638389.13e-73ethylene-responsive transcription factor 12
TrEMBLA0A0D9WI731e-135A0A0D9WI73_9ORYZ; Uncharacterized protein
STRINGLPERR05G17470.11e-135(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-22ERF domain protein 12