PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G17760.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 287aa    MW: 30671.9 Da    PI: 4.8484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G17760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00031952153454
                      TTS-STCHHHHHHHHHHHHHH CS
              HLH  34 pskKlsKaeiLekAveYIksL 54 
                      p  K + a++L +A+eYIk L
  LPERR05G17760.1 195 PTFKTDTASVLHEAIEYIKFL 215
                      5669999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-6194234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-6195224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MADEWWINSA APARTGDDEA AACSTAPVSD ESSAARSSAP MSFCQSGLLP DAAAASSLPS  60
PFLFADRHMD YWTQDFIGGR SAPAGEAAAA AADASFNTLL QLQGDAASHQ LLLDAMVAPQ  120
GQGVSPYEQD SRFVGSSEIF GQPAMEEEQP QFHLQALSNT ERLHQNASSS AATRSSPGSP  180
AAAKKPRIET PSPLPTFKTD TASVLHEAIE YIKFLHDQVA SLSSPYLRCG RPMQQQHQEG  240
HKAKDNGEAK QDLRSRGLCL VPVASTYTVA NETAMDFWHP TFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G17760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378342e-71CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655458.12e-90PREDICTED: transcription factor bHLH123-like
TrEMBLA0A0D9WIB00.0A0A0D9WIB0_9ORYZ; Uncharacterized protein
STRINGLPERR05G17760.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.46e-38bHLH family protein