PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G18130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CPP
Protein Properties Length: 333aa    MW: 37405.3 Da    PI: 8.1499
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G18130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.14e-144481340
              TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                     +k+C Ckks+Clk+YC Cfa g +Cs++C C+ C+Nk 
  LPERR05G18130.1 44 CKHCACKKSRCLKLYCPCFAGGGYCSDKCGCQPCFNKA 81
                     89**********************************85 PP
2TCR49.96.4e-16129165339
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      k+gCnCkks+ClkkYC+C+++g+ Cs  C+CedC+N 
  LPERR05G18130.1 129 KRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCRNP 165
                      78*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.4E-134283IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.3143167IPR005172CRC domain
PfamPF036384.0E-104580IPR005172CRC domain
SMARTSM011142.8E-15127168IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.4E-11129164IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEPLAPQPVS IVAEAAEPCS MNQLALTPTP KRQKVEEGAD GNGCKHCACK KSRCLKLYCP  60
CFAGGGYCSD KCGCQPCFNK ALYAETVQTT RKVLLSRQKR MSLKINRRSE ANAEAVEDAH  120
HSSSSTPPKR GCNCKKSSCL KKYCDCYQDG TGCSLFCRCE DCRNPFGKNE GIMAEESKRF  180
LYTGADLDHS EDEHDFIVER SPRLQSPISK ESSFQQTPPH IRAGNRDTHM FPQALSQWQP  240
RSWHCSKRQS NDRVIDDSGE YKNSNHDWQL SKQEDSYSIS RCVQILNGMA ELSQVEKSVA  300
PDVFLQAGNR EIFISLSGDV RALWLKRKIQ NLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-124516412120Protein lin-54 homolog
5fd3_B4e-124516412120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G18130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1080530.0AK108053.1 Oryza sativa Japonica Group cDNA clone:002-137-H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640211.10.0protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLA0A0D9WIF90.0A0A0D9WIF9_9ORYZ; Uncharacterized protein
STRINGLPERR05G18130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.12e-45Tesmin/TSO1-like CXC domain-containing protein