PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G18680.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

VOZ

Protein Properties

Length: 623aa MW: 68538.7 Da PI: 5.5398

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G18680.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	418.9	8.7e-129	291	508	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 p+ps++lgpkcalwdc rp++ s+++qdyc+ +ha+laln+ gl+gt+pv+rp+gidlkdg+lfaal+ak+qgk+vgip+cegaat+kspwna+ LPERR05G18680.1 291 PSPSQYLGPKCALWDCGRPVRLSDECQDYCNPYHASLALNDdGLLGTRPVMRPRGIDLKDGPLFAALTAKIQGKNVGIPVCEGAATTKSPWNAP 384 89************************************9799********************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlel 187 elfdlsllege++rewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpss++ewhl+eyein++dalalyrle+ LPERR05G18680.1 385 ELFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSNYEWHLFEYEINDSDALALYRLEY 478 ****************************************************************************************** PP VOZ 188 klvdekksakgkvskdsladlqkklgrlta 217 k++d+k+s+k+k+++++l+++q+++++l+a LPERR05G18680.1 479 KSSDAKRSVKSKLTNSPLSEIQQQMVKLSA 508 **************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
MAGDPTAVAA GGSGSGGKRS STRHQQFRNL AKTRVDDLQE MFSGLQSARK ESRSADAALL 60 EEQVHHMLRE WRAELSNSQS QGNNREASDP PSETLRLLHL AGVDEEDDAT SKLVMPRSPL 120 PMPESHGHLQ GGHDLNPVLQ GGGGAAELMV PQSPLSMPSP HQNHGHGQNA NHNLQGEPVI 180 GGAMQQSQDH GMQGDCGEVA GAANAMFHDQ LYFIDHELNI DDFLRDDDYK INLPGSNADG 240 SNTMQGLGQL DHQQYNLPLD LPPGSFVDAN NSQSSGDVFF HMSDLLTTMC PSPSQYLGPK 300 CALWDCGRPV RLSDECQDYC NPYHASLALN DDGLLGTRPV MRPRGIDLKD GPLFAALTAK 360 IQGKNVGIPV CEGAATTKSP WNAPELFDLS LLEGESLREW LFFDTPRRAF ESGNRKQRSL 420 PDYNGRGWHE SRKQVMKDFG GLKRSYYMDP QPSSNYEWHL FEYEINDSDA LALYRLEYKS 480 SDAKRSVKSK LTNSPLSEIQ QQMVKLSADS PVENKRTARS RPKANQKESN SNAYPALNTP 540 VQVSTPNAHQ TMSVNTPDQV NASNAYQTMS LNTPNQAGPS NAYQAASQMD QMYLNGNVVY 600 GPHLPYGYST ERSDFYWKPS DGT

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

MAGDPTAVAA GGSGSGGKRS STRHQQFRNL AKTRVDDLQE MFSGLQSARK ESRSADAALL  60
EEQVHHMLRE WRAELSNSQS QGNNREASDP PSETLRLLHL AGVDEEDDAT SKLVMPRSPL  120
PMPESHGHLQ GGHDLNPVLQ GGGGAAELMV PQSPLSMPSP HQNHGHGQNA NHNLQGEPVI  180
GGAMQQSQDH GMQGDCGEVA GAANAMFHDQ LYFIDHELNI DDFLRDDDYK INLPGSNADG  240
SNTMQGLGQL DHQQYNLPLD LPPGSFVDAN NSQSSGDVFF HMSDLLTTMC PSPSQYLGPK  300
CALWDCGRPV RLSDECQDYC NPYHASLALN DDGLLGTRPV MRPRGIDLKD GPLFAALTAK  360
IQGKNVGIPV CEGAATTKSP WNAPELFDLS LLEGESLREW LFFDTPRRAF ESGNRKQRSL  420
PDYNGRGWHE SRKQVMKDFG GLKRSYYMDP QPSSNYEWHL FEYEINDSDA LALYRLEYKS  480
SDAKRSVKSK LTNSPLSEIQ QQMVKLSADS PVENKRTARS RPKANQKESN SNAYPALNTP  540
VQVSTPNAHQ TMSVNTPDQV NASNAYQTMS LNTPNQAGPS NAYQAASQMD QMYLNGNVVY  600
GPHLPYGYST ERSDFYWKPS DGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G18680.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069076	0.0	AK069076.1 Oryza sativa Japonica Group cDNA clone:J023004H20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640409.1	0.0	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-117	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0D9WIN1	0.0	A0A0D9WIN1_9ORYZ; Uncharacterized protein
STRING	LPERR05G18680.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-119	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]