PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G19030.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GATA

Protein Properties

Length: 112aa MW: 12206.2 Da PI: 10.4608

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G19030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	25	2.7e-08	2	19	18	35
GATA 18 gnktLCnaCGlyyrkkgl 35 g+ktLCnaCG++y++ +l LPERR05G19030.1 2 GPKTLCNACGVRYKSGRL 19 89************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	7.13E-5	2	42	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.4E-4	2	17	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVVSKHSNSH RKVVELRRQK EMQLMHHQQP 60 HHVAAGGVAG GMLHVANPLL FDGPSAPPLI AGAAADEFLI HNRIGPDFRQ LI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G19030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130611	6e-79	AC130611.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0483D07, complete sequence.
GenBank	AC132491	6e-79	AC132491.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0599F04, complete sequence.
GenBank	AP014961	6e-79	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	6e-79	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBank	CT837664	6e-79	CT837664.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA206K19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638019.1	2e-50	GATA transcription factor 12
Swissprot	P69781	1e-35	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A0D9WIS7	4e-77	A0A0D9WIS7_9ORYZ; Uncharacterized protein
STRING	LPERR05G19030.1	7e-78	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3025	31	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	6e-37	GATA transcription factor 12

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]