PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G19500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 440aa    MW: 49457.1 Da    PI: 5.2141
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G19500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.2e-34161072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+++ll+
  LPERR05G19500.1  16 FLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHTHLLK 100
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  LPERR05G19500.1 101 NIHRRKP 107
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.6E-3812105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.62E-3512105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-6112105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.2E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MESSGQSGGG GGPPPFLIKT YEMVEDAATN HVVSWGPGGA SFVVWNPLDF SRDLLPKYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANED FIRGHTHLLK NIHRRKPVHS HSLQNQINGP  120
LAEAERRELE EEINRLKYEK SILVADLQRQ NQQQYVINWQ MQTLEGRLMA MEQRQKNIVS  180
SLCEMLQRRG GVVSSSILDA DHFSKKRRVP KINLCLDDCA VEEQKVFQFD EIGTETPGLS  240
PVLPVANGET FDKVELSLVS LEKLFQRASD ACTAAEEMYH HGGTESSPAI CPHAEMNTAP  300
METGINLQSP DGIHHSSPNT GHAHLCTTFT ESPTTLVQSP ELPMAEIHED AHVTAEADVN  360
SEFASSTDTS QDGTTETEVS HGPTNDVFWE RFLTETPQCC LAESERREIK DCNGFHHREK  420
VDQITEQMGH LASAEHTLHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22910519129Heat shock factor protein 1
5d5v_B1e-22910519129Heat shock factor protein 1
5d5v_D1e-22910519129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G19500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639851.10.0heat stress transcription factor A-4d
SwissprotQ93VB50.0HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLA0A0D9WIY30.0A0A0D9WIY3_9ORYZ; Uncharacterized protein
STRINGLPERR05G19500.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-67heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]