PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G20140.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

MYB_related

Protein Properties

Length: 465aa MW: 52172.7 Da PI: 9.9846

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G20140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.8e-07	132	174	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+ eE ++l ++++++ + + Ia ++++ R+ +++ksr+++ LPERR05G20140.1 132 AWSREETDQLFELCERFDLR-FVVIADRFPTDRSVEDLKSRYYS 174 7*****************.*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	9.5E-31	105	179	IPR032563	DAMP1, SANT/Myb-like domain
SMART	SM00717	4.1E-8	129	178	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.16E-6	130	180	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-5	132	177	IPR009057	Homeodomain-like
CDD	cd11658	1.10E-17	133	175	No hit	No description
Pfam	PF05499	7.4E-6	312	377	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MDAKDILGIP KGVFPSVQEK KPRAPKEPQR KPDGVSREVY ALTGGVGMPP LMPTIEASHL 60 KRRPAVEKEK VAWQWLPFTS SARADSLQLY HWVRVVNGAP PTGDYHFAKY NKKADVLKYN 120 DEEYEKYLTD PAWSREETDQ LFELCERFDL RFVVIADRFP TDRSVEDLKS RYYSVTRALL 180 IARARSFDEV AGNPLVKETF NAAHETERKR ALSALLSQTK QQERKDAEIL AEAKRIMESR 240 AASKHTEEAG TLVSFDNATL AADGVSPLSN AHPSSTATLP AAVVNNSIPA SLRMLRVYLR 300 TQALDQMVQE ASASAGLRVI KRVDEFLHRL GVNLKPKVPT KAVCVEHLEL RNEILTLLNL 360 QKQVQHKELE VSANRENSFT EAPSTPKRAN RDVDRPFVPD TVGFGGERAG KRDHKRKIAL 420 WINLFGSFPA STFTKLLSLV EAVLGLCLYS ASALRRLSLR IHVGR

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MDAKDILGIP KGVFPSVQEK KPRAPKEPQR KPDGVSREVY ALTGGVGMPP LMPTIEASHL  60
KRRPAVEKEK VAWQWLPFTS SARADSLQLY HWVRVVNGAP PTGDYHFAKY NKKADVLKYN  120
DEEYEKYLTD PAWSREETDQ LFELCERFDL RFVVIADRFP TDRSVEDLKS RYYSVTRALL  180
IARARSFDEV AGNPLVKETF NAAHETERKR ALSALLSQTK QQERKDAEIL AEAKRIMESR  240
AASKHTEEAG TLVSFDNATL AADGVSPLSN AHPSSTATLP AAVVNNSIPA SLRMLRVYLR  300
TQALDQMVQE ASASAGLRVI KRVDEFLHRL GVNLKPKVPT KAVCVEHLEL RNEILTLLNL  360
QKQVQHKELE VSANRENSFT EAPSTPKRAN RDVDRPFVPD TVGFGGERAG KRDHKRKIAL  420
WINLFGSFPA STFTKLLSLV EAVLGLCLYS ASALRRLSLR IHVGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	7e-20	104	184	4	88	DNA methyltransferase 1-associated protein 1
4iej_A	7e-20	104	184	4	88	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G20140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071090	0.0	AK071090.1 Oryza sativa Japonica Group cDNA clone:J023079C11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006654721.2	0.0	PREDICTED: SWR1-complex protein 4
Swissprot	Q8VZL6	1e-173	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A0D9WJ77	0.0	A0A0D9WJ77_9ORYZ; Uncharacterized protein
STRING	LPERR05G20140.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6153	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-175	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]