PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G21780.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GATA
Protein Properties Length: 230aa    MW: 23596.8 Da    PI: 8.4161
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G21780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.71e-20103137135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nC+tt+TplWR+gp+g+k+LCnaCG++y+k+++
  LPERR05G21780.1 103 CANCNTTSTPLWRNGPRGPKSLCNACGIRYKKEER 137
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.28597133IPR000679Zinc finger, GATA-type
SMARTSM004016.6E-1997149IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-1498137No hitNo description
Gene3DG3DSA:3.30.50.102.3E-17101137IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.96E-14102134No hitNo description
PfamPF003202.2E-18103137IPR000679Zinc finger, GATA-type
PROSITE patternPS003440103128IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAPAPCTCGM MYGGCGGGCA SAFSLLFPMA GGQYYYRHCG AAAEENRPSP YGVGGAAVDC  60
TLSLGTPSTR RAEATPPPTT ARPGGGGGKQ DGAAVASCKP RRCANCNTTS TPLWRNGPRG  120
PKSLCNACGI RYKKEERRAA AAVAPAPPVM DSATAAAYAY CYSMPTPAPA PAQWGCYGQA  180
AAAAKSASYA MFGEVVDAAD DGPCLSWRLN MMPSSPAFAV GERPGLFQYY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G21780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638692.22e-87GATA transcription factor 19
TrEMBLA0A0D9WJV81e-162A0A0D9WJV8_9ORYZ; Uncharacterized protein
STRINGLPERR05G21780.11e-162(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.14e-22GATA transcription factor 19