PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G21930.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 346aa    MW: 37068.6 Da    PI: 9.6973
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G21930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.17e-22212274163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkre+rkq+NRe+ArrsR+RK+ae+e L++ v++L+aeN++L++e+++l++ ++kl+ e+
  LPERR05G21930.1 212 ERELKREKRKQSNRESARRSRLRKQAETEDLATQVESLTAENTSLRSEISRLSESSDKLRLEN 274
                      89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-31193IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1707.2E-17209271No hitNo description
SMARTSM003384.2E-22212276IPR004827Basic-leucine zipper domain
PfamPF001702.0E-20212274IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.139214277IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-11215270No hitNo description
CDDcd147023.91E-22217265No hitNo description
PROSITE patternPS000360219234IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAHDEAVATQ KTGKTTSPPK DQPAPSPYPD WSTVQAYYGS GVLPPTYFAP AIAAGHAPPP  60
YMWGPQPMMP PPFGTPYAAM YPHGGAYPHP FMPMMANPLS MEPAKSANSK EKNSNKKLKE  120
ADGAAVSAGS GDSKKTMTSS EDCSADGCSD VNDLKVGKSS RKRRSDGAAQ VIKPSATNVA  180
NSRALGTPIS PPPGVIVPSH TGVSTELLIK DERELKREKR KQSNRESARR SRLRKQAETE  240
DLATQVESLT AENTSLRSEI SRLSESSDKL RLENSALMGK LKDPATTTQA ETSMHKTTAS  300
SPRVVENFLS MIDNTNKSSV RHTEHAEPKL RQLLGSSPAT DVVAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164SRKRRS
2228234RRSRLRK
3228235RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G21930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0654400.0AK065440.1 Oryza sativa Japonica Group cDNA clone:J013020K21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640745.10.0common plant regulatory factor 1
TrEMBLA0A0D9WJX40.0A0A0D9WJX4_9ORYZ; Uncharacterized protein
STRINGLPERR05G21930.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27763888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.21e-19G-box binding factor 1