PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G22320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 357aa    MW: 39918.4 Da    PI: 6.8702
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G22320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS704.7e-22902121127
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+ L++c  a+++gd  +    L+  +e+    p+   + R+ a ft AL++rl+ + ++l+  lpp   +    +++   ++ f+ev P+lk
  LPERR05G22320.1  90 LVNHLVTCTCAIQAGDYIAMAGSLSDAREIltKIPTHIGIGRVLAIFTDALSERLFPMFPNLA--LPPPLPR----TKQRDLFRGFYEVGPYLK 177
                      5789*************************976778889*******************999988..5555544....344456789********* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpa 127
                      f h++aN+aIl+a+e+   vH+iDf ++  +QWp+
  LPERR05G22320.1 178 FPHFIANRAILKAFESYGIVHVIDFILMDDVQWPP 212
                      *********************************96 PP
2GRAS86.15.8e-27218339154274
             GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvv 242
                      +++el  +g  La+fA +++vpf+f+ ++ +++++l +++L++ p Ea+a+n ++qlhrll ++ ++       ++d vL+l+ sl+Pkv++  
  LPERR05G22320.1 218 DHDELCDVGIPLAEFAWSCNVPFSFRGIARDQIDCLCPWMLHTIPSEAIAINAMIQLHRLLVDQNTTMAvsssvPIDIVLDLIASLNPKVFT-- 309
                      67899999*******************9999*****************************955544333334668999*************8.. PP

             GRAS 243 eqeadhnsesFlerflealeyysalfdsleak 274
                        eadhn  s+lerf ++l yy+++fdslea 
  LPERR05G22320.1 310 --EADHNMLSLLERFNNSLFYYAVMFDSLEAA 339
                      ..89999**********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.264357IPR005202Transcription factor GRAS
PfamPF035141.6E-1990212IPR005202Transcription factor GRAS
PfamPF035142.0E-24218339IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTTLVASAYP HTLSSSHGSL RQLRWLVAHG RRRRCHDVCQ GNKQQQSSNN RAAVYGSLPP  60
GMVVPPLVSF TVQIEAVRRW HEIEKAIMRL VNHLVTCTCA IQAGDYIAMA GSLSDAREIL  120
TKIPTHIGIG RVLAIFTDAL SERLFPMFPN LALPPPLPRT KQRDLFRGFY EVGPYLKFPH  180
FIANRAILKA FESYGIVHVI DFILMDDVQW PPPLAIEDHD ELCDVGIPLA EFAWSCNVPF  240
SFRGIARDQI DCLCPWMLHT IPSEAIAINA MIQLHRLLVD QNTTMAVSSS VPIDIVLDLI  300
ASLNPKVFTE ADHNMLSLLE RFNNSLFYYA VMFDSLEAAS CHVRGNVPGN PLIEALL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-1711033932280Protein SCARECROW
5b3h_A1e-1611033931279Protein SCARECROW
5b3h_D1e-1611033931279Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G22320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.11e-119DELLA protein SLR1
TrEMBLA0A0D9WK150.0A0A0D9WK15_9ORYZ; Uncharacterized protein
STRINGLPERR05G22320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-36GRAS family protein