PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G22330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 467aa    MW: 51031.9 Da    PI: 6.1194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G22330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.74.6e-107574311374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      lv+ L++cA a+++gd ++a+  L++ +e+    p+g  + R+ ++f+ AL +rl+   ++ ++ l+p +      +e+   ++ f+e+ P lk
  LPERR05G22330.1  57 LVNHLVTCAGAIQAGDYAAASGRLSNAREIltKIPTGVGIGRVLTHFADALYERLFPAFPNSASPLQPPR------AERRELFRGFYEAGPHLK 144
                      5789*************************988889**********************6666555554444......556778899********* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+h+taNqaIlea++g+  vH+iDf ++ G+QW++++qa+a Rp+gpp lR+ gvg+ ++++++el+e+g rLa+fA++++vpf f+ ++ +++
  LPERR05G22330.1 145 FAHFTANQAILEAFKGCGVVHVIDFALMDGVQWLSFIQAMAVRPGGPPILRLSGVGPLATDDRDELREVGIRLAEFARSCNVPFAFRGIAGEKI 238
                      *****************************************************************************************999** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      ++l+++++++ pgE++aVn vlqlhrll ++ ++       ++d vL+l+ sl+Pkv+++ve+eadhn++s+lerf+++l yy a+fdslea  
  LPERR05G22330.1 239 DELHTWMFQTVPGETIAVNAVLQLHRLLVDQDDVVAasspaPIDIVLDLIMSLNPKVFTMVEHEADHNKSSLLERFTNSLFYYGAMFDSLEAAS 332
                      ***************************95544333323466899**********************************************8884 PP

             GRAS 276 pres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                       r++    + + + +++l+ ei ++v++eg++r erhe +++W er+++aG++++p s ++  qa + +r    d +rv+e++g l+l+W++++
  LPERR05G22330.1 333 -RHDggdGTGNPLAEAFLQGEIADIVSHEGSSRMERHEPMARWIERMQRAGMTQIPQSRNELWQAAMHVRSGT-D-FRVQEHDGFLTLTWHNQK 423
                      .4444668888999999****************************************************9988.5.****************** PP

             GRAS 367 LvsvSaWr 374
                      L+++SaWr
  LPERR05G22330.1 424 LYTASAWR 431
                      *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.59731413IPR005202Transcription factor GRAS
PfamPF035141.6E-10457431IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDVATALAKA INSNNNEEAA YAPLTPGMVP PPPGVPSALQ IEATRRWQEM EKLALRLVNH  60
LVTCAGAIQA GDYAAASGRL SNAREILTKI PTGVGIGRVL THFADALYER LFPAFPNSAS  120
PLQPPRAERR ELFRGFYEAG PHLKFAHFTA NQAILEAFKG CGVVHVIDFA LMDGVQWLSF  180
IQAMAVRPGG PPILRLSGVG PLATDDRDEL REVGIRLAEF ARSCNVPFAF RGIAGEKIDE  240
LHTWMFQTVP GETIAVNAVL QLHRLLVDQD DVVAASSPAP IDIVLDLIMS LNPKVFTMVE  300
HEADHNKSSL LERFTNSLFY YGAMFDSLEA ASRHDGGDGT GNPLAEAFLQ GEIADIVSHE  360
GSSRMERHEP MARWIERMQR AGMTQIPQSR NELWQAAMHV RSGTDFRVQE HDGFLTLTWH  420
NQKLYTASAW RCADVGPRVV TGGAATMDPK ESKNGGKNNS GGTCSEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-47574314375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G22330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638486.10.0DELLA protein SLR1
TrEMBLA0A0D9WK160.0A0A0D9WK16_9ORYZ; Uncharacterized protein
STRINGLPERR05G22330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.19e-85GRAS family protein