PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G22380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 286aa    MW: 32679.2 Da    PI: 9.8744
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G22380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07171198527
                      --SGGGGTS.....--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartG.....tCkyGdrCkFaHgp 27 
                      +Cr+f+rtG     tC++G  C+FaHg+
  LPERR05G22380.1 171 PCRNFRRTGagdagTCPRGLWCPFAHGE 198
                      7*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0035166198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.563166199IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-5171198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5171200IPR000571Zinc finger, CCCH-type
SMARTSM0035684207230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAAPNPYFSR RQHTTPGTSA HPVRVRPHPR EIRLPLLARG ASTTPASASS SGERRWCGLP  60
LASSPMAAPT SSSSRSPYDY YAPATSARQE QLAAAKAAAD IELWAHQVPI SGFYQSGKPK  120
FTLDDNFMMY YFKASECHCS RRHPWTTCPY AHPGETMVRR DPLRFDYAAM PCRNFRRTGA  180
GDAGTCPRGL WCPFAHGEFE TLLHPARYRT QMCRHGVFCT RPICFFAHDY REMRIVRDGA  240
ATTLSPWMPQ PDVVRLLWFG RQYEQIAFRD RDVVPREYNR RGAWKW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G22380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WK220.0A0A0D9WK22_9ORYZ; Uncharacterized protein
STRINGLPERR05G22380.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.17e-33C3H family protein