PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G22440.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 348aa    MW: 37690.6 Da    PI: 8.3408
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G22440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH406.5e-13274299126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ + +tG+C+y d+C+FaHg
  LPERR05G22440.1 274 FKTELCNKWEETGECPYDDQCQFAHG 299
                      79***********************9 PP
2zf-CCCH26.31.3e-08312337126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykte Cr  +++G C+yG rC+F H+
  LPERR05G22440.1 312 YKTEVCRMVLAGGVCPYGHRCHFRHS 337
                      9**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-17268306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-10270305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408273301IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-8273300IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-9307339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-13307337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657311339IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5311338IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-6312337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQEALLPPTH PGRFYSHFGP TVFGGGDQRL SSPNLLTNGE DLFYGCYSPF SPTRPRGLSP  60
PPRGAAASFS HSSSSNSVVD DGDDAAAAAA AATDHRIHLA HLALQYQEVA DRFELCLSHL  120
AEAADEAAAL RRENAELRVA NNDLACRIAK FDSRQSSAIA LAGDLRRLRL GLPEKHAVPA  180
LPPPPPPPAA LMHPVAVPEK RAVLPKSISI RSTGYQKQNQ GGKHRVSKPV NVGSQRVFVG  240
IDGADGGDHK GGAKKKEPPA MGGLELEVYN QGTFKTELCN KWEETGECPY DDQCQFAHGV  300
AELRPVIRHP RYKTEVCRMV LAGGVCPYGH RCHFRHSITP ADRLAFRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21274337467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G22440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063540.0AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640820.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ6L5G10.0C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0D9WK280.0A0A0D9WK28_9ORYZ; Uncharacterized protein
STRINGLPERR05G22440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-46C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]