PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G22660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ZF-HD
Protein Properties Length: 179aa    MW: 18779.9 Da    PI: 8.5094
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G22660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.27.2e-322780357
      ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                     +vrY+eCl+NhAa++Ggh+vDGCgEfmp  g++++++alkCaACgCHR+FHR++ 
  LPERR05G22660.1 27 EVRYHECLRNHAAAMGGHVVDGCGEFMPG-GDNSDSDALKCAACGCHRSFHRKDD 80
                     79**************************9.8889******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-182879IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.0E-282879IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-272979IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.4693079IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.7E-6147172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGVAYGRTPP SSSTSPAAAG NGAGAAEVRY HECLRNHAAA MGGHVVDGCG EFMPGGDNSD  60
SDALKCAACG CHRSFHRKDD GQPPPPRLLL PSPSPRVPLL MPPPPPPPSH HYPHLSFPYH  120
GHTPSGSGGT TTESSSEERG TPSASATAAL AQGRRKRFRT KFTPEQKEQM LASLHGDKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G22660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639557.19e-59zinc-finger homeodomain protein 6
SwissprotB8AX532e-60ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A0D9WK561e-126A0A0D9WK56_9ORYZ; Uncharacterized protein
STRINGLPERR05G22660.11e-126(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-22homeobox protein 22