PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G22680.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 102aa    MW: 11982.4 Da    PI: 9.7908
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G22680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-071559344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +++ +a + + ++   +W  ++r+mg  +++ +++ ++
  LPERR05G22680.1 15 GWTQRQNKQFECALAVYDKEtpeRWQNVSRYMGGAKSPDEVRRHF 59
                     6*****************99*************899********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.075863IPR017877Myb-like domain
SMARTSM007176.2E-51265IPR001005SANT/Myb domain
SuperFamilySSF466895.13E-101471IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASSKQQQQQ QAAGGWTQRQ NKQFECALAV YDKETPERWQ NVSRYMGGAK SPDEVRRHFD  60
HLLHDVARIE SSAGTRLIPF LRYNHLDLDA TTRPIYRYLK FQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1616831173RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G22680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126132e-69CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8364522e-69CT836452.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639028.19e-34protein RADIALIS-like 3
TrEMBLA0A0D9WK582e-71A0A0D9WK58_9ORYZ; Uncharacterized protein
STRINGLPERR05G22680.13e-72(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.14e-21RAD-like 5