PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G22790.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

WRKY

Protein Properties

Length: 153aa MW: 17211.5 Da PI: 10.1255

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G22790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.6e-33	31	88	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt ++C vkk+vers++d ++v++tYeg+H+h+ LPERR05G22790.1 31 EDGYRWRKYGQKAVKNSTYPRSYYRCTAPRCGVKKRVERSQQDASMVITTYEGQHTHP 88 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-35	15	90	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-29	22	90	IPR003657	WRKY domain
PROSITE profile	PS50811	30.262	25	90	IPR003657	WRKY domain
SMART	SM00774	3.4E-38	30	89	IPR003657	WRKY domain
Pfam	PF03106	6.4E-27	31	88	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MNNNQAKKKG EKKGREPRVA FMTKSEVDHL EDGYRWRKYG QKAVKNSTYP RSYYRCTAPR 60 CGVKKRVERS QQDASMVITT YEGQHTHPSP MGYHQHRQRA AAAMVAAGAG YYPYFGTAPL 120 SLPGFCPDDD ALAAGVTTMN HQQMSIHAAC PRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-28	20	90	7	77	Probable WRKY transcription factor 4
2lex_A	7e-28	20	90	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G22790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109568	1e-102	AK109568.1 Oryza sativa Japonica Group cDNA clone:002-130-E04, full insert sequence.
GenBank	AY870600	1e-102	AY870600.1 Oryza sativa (japonica cultivar-group) WRKY8 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655633.1	9e-65	PREDICTED: probable WRKY transcription factor 4
Swissprot	Q8VWJ2	1e-42	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A0D9WK77	1e-112	A0A0D9WK77_9ORYZ; Uncharacterized protein
STRING	LPERR05G22790.1	1e-113	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	3e-40	WRKY DNA-binding protein 71

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]