PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G23340.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CPP
Protein Properties Length: 153aa    MW: 16784 Da    PI: 8.4866
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G23340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.31.3e-0720461542
              TCR 15 kkYCeCfaagkkCseeCkCedCkNkeek 42
                     k+YC Cf+  ++C + CkC++C+N+e++
  LPERR05G23340.1 20 KNYCPCFSTYHFCVD-CKCSGCHNTEDN 46
                     9**************.********9975 PP
2TCR44.82.5e-14106143340
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                       kgC C+kskC k+YCeC+++++ C+++CkC++C N++
  LPERR05G23340.1 106 AKGCICRKSKCSKNYCECYKNKVGCTSKCKCQECGNQH 143
                      69**********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163422.9075144IPR005172CRC domain
PfamPF036383.2E-52044IPR005172CRC domain
PfamPF166825.1E-62044IPR032049E3 ubiquitin-protein ligase Msl2, CXC domain
SMARTSM011140.00222046IPR033467Tesmin/TSO1-like CXC domain
SMARTSM011143.8E-8104145IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-10107142IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MNRNRRRRLM AVSSFILGAK NYCPCFSTYH FCVDCKCSGC HNTEDNGDEV EETFAIARMK  60
NPGAFGPKIV SVQDATIVDP RSSSGAVSDP KNSSGAVPGN EQLMYAKGCI CRKSKCSKNY  120
CECYKNKVGC TSKCKCQECG NQHGIKNSEY TTS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G23340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640260.11e-49protein tesmin/TSO1-like CXC 2 isoform X2
RefseqXP_025881429.11e-49protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A0D9WKF01e-109A0A0D9WKF0_9ORYZ; Uncharacterized protein
STRINGLPERR05G23340.11e-110(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.14e-20Tesmin/TSO1-like CXC domain-containing protein