PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G23440.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 258aa    MW: 27632.9 Da    PI: 8.8242
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G23440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-1399143347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
  LPERR05G23440.1  99 PWSEQEHRQFLAGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 143
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.45592148IPR017930Myb domain
SuperFamilySSF466891.12E-1693149IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-1795147IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-1096139IPR009057Homeodomain-like
SMARTSM007174.6E-1096146IPR001005SANT/Myb domain
PfamPF002492.5E-1099142IPR001005SANT/Myb domain
CDDcd001675.37E-999144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MATRCSDSTA AGDGAGLRLF GVQLHAAPAS TQLLHKSYSM DCLRMQASSS SSLASLLSPS  60
PPLPLLLSID EGGERPADGY LSDGPHGGAT MREKKKGVPW SEQEHRQFLA GLEKLGKGDW  120
RGISRSFVTT RTPTQVASHA QKFFLRQQNS AGKKTNKRRT SLFDMVQDCE SGRSFATDPA  180
SHCKNNTSAS RSLKVSHQGS CKKSPDYSMW ASSETSSVSE AAPVVMEQAQ AHGYGSNHHC  240
SPLDLELGMS LSTQSIGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G23440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655650.21e-116PREDICTED: uncharacterized protein LOC102703403
TrEMBLA0A0D9WKG60.0A0A0D9WKG6_9ORYZ; Uncharacterized protein
STRINGLPERR05G23440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.19e-37MYB_related family protein