PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G00300.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 482aa    MW: 51400.6 Da    PI: 6.2474
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G00300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS219.91.3e-671234811374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      lve Ll++A+++++gd + a+ +Larl++l  p+ +p+ R+aa +  A    l+          pp ++++ ++  +laa+k++ ++sP+++f+
  LPERR06G00300.1 123 LVEHLLDAARHLDAGDITTAKGILARLNHLL-PSPSPLLRAAALLRDAF---LLP--------PPPPSSPPLDVPLKLAAHKALADASPTVQFA 204
                      5789*************************94.4457********99996...444........3555556678999****************** PP

             GRAS  95 hltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       +t  qaIl+a++     +rvHi+Dfd+  G++Wp+L+++La R+  + s+++T+++sp+s +  el+ t e L++fA+ l vpfefn+++ + 
  LPERR06G00300.1 205 AFTSTQAILDALAAGnaaRRVHIVDFDLAFGAHWPPLIHELARRS-LTTSIKLTALVSPASRHPLELHLTYETLTRFAADLAVPFEFNAVAFDP 297
                      ***********97655779***********************995.5589****************************************9998 PP

             GRAS 186 ledl.eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                      l+++ ++ ++ ++   +Ea+aV+l     ++         + ++ ++lvk+l+P vvv v++ +++++ ++ ++ l+ l+ ++al++sl+a  +
  LPERR06G00300.1 298 LAAItSPATMGISAapDEAVAVHLPSGSGTFS--------PAPAHVRLVKELRPAVVVSVDHGCERGDLPLPHHALNILRSCAALLESLDAAPA 383
                      8877566666665555**********999997........567789*********************************************955 PP

             GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv.lgWkdrpLvs 369
                      + +e  +kvE+++l+++++ +   +        e++   +++l +aGF p++ls+ a++qa++llr++++dg++ve++ ++++ l W++ +Lvs
  LPERR06G00300.1 384 ASQEMVSKVEQFILRPRVEHLALFAAGG-GGGGEKAPPLQSMLASAGFAPLQLSNAAEAQAECLLRRTSNDGFHVEKKTQAALaLWWRRSELVS 476
                      6668889***********9986655554.5789999****************************************88555555********** PP

             GRAS 370 vSaWr 374
                      vSaWr
  LPERR06G00300.1 477 VSAWR 481
                      ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098534.74997460IPR005202Transcription factor GRAS
PfamPF035144.5E-65123481IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSSCHPPHQY SSLIQEQQLA AAGKSPEPTS VLYNRSPSPP TSSSLGSSLK PDHHPIPPPN  60
SIAAADVDDD WESVLMISGD MFAPHPQDSS FLRWIMVDAQ PHAIPHNPFP FEEPNQPQDE  120
DALVEHLLDA ARHLDAGDIT TAKGILARLN HLLPSPSPLL RAAALLRDAF LLPPPPPSSP  180
PLDVPLKLAA HKALADASPT VQFAAFTSTQ AILDALAAGN AARRVHIVDF DLAFGAHWPP  240
LIHELARRSL TTSIKLTALV SPASRHPLEL HLTYETLTRF AADLAVPFEF NAVAFDPLAA  300
ITSPATMGIS AAPDEAVAVH LPSGSGTFSP APAHVRLVKE LRPAVVVSVD HGCERGDLPL  360
PHHALNILRS CAALLESLDA APAASQEMVS KVEQFILRPR VEHLALFAAG GGGGGEKAPP  420
LQSMLASAGF APLQLSNAAE AQAECLLRRT SNDGFHVEKK TQAALALWWR RSELVSVSAW  480
RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2119148180375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G00300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881861.11e-160scarecrow-like protein 6
TrEMBLA0A0D9WKU40.0A0A0D9WKU4_9ORYZ; Uncharacterized protein
STRINGLPERR06G00300.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-56GRAS family protein