PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G00360.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 137aa    MW: 15774.8 Da    PI: 7.2739
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G00360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-0890124137
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 
                      r +WT  E++++++a +++  + Wk+I +++g  +t 
  LPERR06G00360.1  90 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTV 124
                      789*****************77.*********.8885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-1077126IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-988125IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.7E-489124IPR009057Homeodomain-like
PfamPF002492.3E-690124IPR001005SANT/Myb domain
CDDcd001671.26E-492126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MVTWTCLLLP PPSLTASLCH RNIFHPPQHQ RRSIERALNP SDLEEGGIVS RREEMSSGTE  60
HHPLDSSAGE PPEDDAGRRV RKPYTITKSR ESWTDPEHDK FLEALQLFDR DWKKIEAYVG  120
SKTVIQPHKL SYHKLLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G00360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116722e-70AK111672.1 Oryza sativa Japonica Group cDNA clone:J013156D15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WKV45e-97A0A0D9WKV4_9ORYZ; Uncharacterized protein
STRINGLPERR06G00360.18e-98(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1733589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-28MYB_related family protein