PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G00470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25951.5 Da    PI: 6.9586
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G00470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81e-262170251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s
  LPERR06G00470.1 21 RIEDATSRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 70
                     8*********************************************9986 PP
2K-box66.59e-2396186898
            K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +l++++ ++++ +++ +  ei + +   R+++GedLes+sl+eL+ Le qLeksl++iR +K++ ++++i+elq++ek l+een  L + l
  LPERR06G00470.1  96 ELTAHHVQKMKIQAETIATEIGTVEAYTRKMQGEDLESCSLQELNDLEMQLEKSLSSIRLHKQKKMMDKISELQQQEKILSEENALLLSDL 186
                      488999******************************************************************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-32971IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.0391272IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001468IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-241434IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-281593IPR002100Transcription factor, MADS-box
CDDcd002653.44E-351889No hitNo description
PfamPF003191.2E-252168IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-243449IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-244970IPR002100Transcription factor, MADS-box
PfamPF014861.0E-2099185IPR002487Transcription factor, K-box
PROSITE profilePS5129712.718102196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAAAAAVGGG RRRGGRREMR RIEDATSRQV TFSKRRKGLL KKASELSVLC DAEVALLVFS  60
PRGRFFHFAS APDLEDTIDR YISHTEEAAA NKKPGELTAH HVQKMKIQAE TIATEIGTVE  120
AYTRKMQGED LESCSLQELN DLEMQLEKSL SSIRLHKQKK MMDKISELQQ QEKILSEENA  180
LLLSDLQCKV QHVPSEADDA APERELNHQH SRDIDVDTEL KSVPKQFMPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-161586274MEF2C
5f28_B4e-161586274MEF2C
5f28_C4e-161586274MEF2C
5f28_D4e-161586274MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G00470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2410551e-157AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693944.11e-105PREDICTED: MADS-box transcription factor 50-like isoform X1
TrEMBLA0A0D9WKW71e-168A0A0D9WKW7_9ORYZ; Uncharacterized protein
STRINGLPERR06G00470.11e-169(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP174341010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-50AGAMOUS-like 20