PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G00470.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 159aa    MW: 17687.2 Da    PI: 9.2202
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G00470.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.1e-272170251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s
  LPERR06G00470.3 21 RIEDATSRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 70
                     8*********************************************9986 PP
2K-box49.22.3e-1795157769
            K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                       +l++++ ++++ +++ +  ei + +   R+++GedLes+sl+eL+ Le qLeksl++iR +K
  LPERR06G00470.3  95 GELTAHHVQKMKIQAETIATEIGTVEAYTRKMQGEDLESCSLQELNDLEMQLEKSLSSIRLHK 157
                      3488999*****************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-32971IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.0391272IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-251434IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001468IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-281593IPR002100Transcription factor, MADS-box
CDDcd002651.29E-351889No hitNo description
PfamPF003196.2E-262168IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-253449IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-254970IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1499158IPR002487Transcription factor, K-box
PROSITE profilePS512979.134102159IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MAAAAAVGGG RRRGGRREMR RIEDATSRQV TFSKRRKGLL KKASELSVLC DAEVALLVFS  60
PRGRFFHFAS APDLEDTIDR YISHTEEAAA NKKPGELTAH HVQKMKIQAE TIATEIGTVE  120
AYTRKMQGED LESCSLQELN DLEMQLEKSL SSIRLHKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-171586274MEF2C
5f28_B7e-171586274MEF2C
5f28_C7e-171586274MEF2C
5f28_D7e-171586274MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G00470.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693945.18e-78PREDICTED: MADS-box transcription factor 50-like isoform X2
SwissprotA2Z9Q71e-48MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLA0A0D9WKW91e-112A0A0D9WKW9_9ORYZ; Uncharacterized protein
STRINGLPERR06G00470.11e-111(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-46AGAMOUS-like 20