PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G00470.4
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MIKC_MADS
Protein Properties Length: 156aa    MW: 17322.7 Da    PI: 9.2193
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G00470.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.9e-272170251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+ + rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s
  LPERR06G00470.4 21 RIEDATSRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 70
                     8*********************************************9986 PP
2K-box45.82.7e-16951541069
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                       e +a +++ +++ +  ei + +   R+++GedLes+sl+eL+ Le qLeksl++iR +K
  LPERR06G00470.4  95 GELTAHKMKIQAETIATEIGTVEAYTRKMQGEDLESCSLQELNDLEMQLEKSLSSIRLHK 154
                      566678899999*********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-32971IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.0391272IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-251434IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001468IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-281594IPR002100Transcription factor, MADS-box
CDDcd002651.65E-351889No hitNo description
PfamPF003196.0E-262168IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-253449IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-254970IPR002100Transcription factor, MADS-box
PfamPF014864.6E-1499155IPR002487Transcription factor, K-box
PROSITE profilePS512978.81399156IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAAAAAVGGG RRRGGRREMR RIEDATSRQV TFSKRRKGLL KKASELSVLC DAEVALLVFS  60
PRGRFFHFAS APDLEDTIDR YISHTEEAAA NKKPGELTAH KMKIQAETIA TEIGTVEAYT  120
RKMQGEDLES CSLQELNDLE MQLEKSLSSI RLHKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-171586274MEF2C
5f28_B6e-171586274MEF2C
5f28_C6e-171586274MEF2C
5f28_D6e-171586274MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G00470.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2410551e-138AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693945.16e-79PREDICTED: MADS-box transcription factor 50-like isoform X2
SwissprotA2Z9Q73e-47MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLA0A0D9WKX01e-110A0A0D9WKX0_9ORYZ; Uncharacterized protein
STRINGLPERR06G00470.11e-93(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.14e-47AGAMOUS-like 20