PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G02270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 255aa    MW: 26959.5 Da    PI: 9.4327
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G02270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-1979133256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee+F+++++++ +++  L+++lgL  rqV vWFqNrRa+ k
  LPERR06G02270.1  79 RKKLRLSKDQAAVLEECFRMHHTLTPKQKLALSNRLGLRPRQVEVWFQNRRARTK 133
                      788899***********************************************98 PP
2HD-ZIP_I/II121.83.5e-3979169192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlsk+q+++LEe+F+++++L+p++K +l+++Lgl+prqv+vWFqnrRARtk+kq+E+dye+Lkr++++l+ en+rLe+ev+eLr +lk
  LPERR06G02270.1  79 RKKLRLSKDQAAVLEECFRMHHTLTPKQKLALSNRLGLRPRQVEVWFQNRRARTKLKQTEVDYEHLKRWCEQLAGENRRLEREVAELR-ALK 169
                      69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-1863129IPR009057Homeodomain-like
SuperFamilySSF466892.44E-1864136IPR009057Homeodomain-like
PROSITE profilePS5007116.42275135IPR001356Homeobox domain
SMARTSM003891.1E-1577139IPR001356Homeobox domain
PfamPF000461.5E-1679133IPR001356Homeobox domain
CDDcd000868.86E-1679136No hitNo description
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PfamPF021832.0E-10135169IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.2E-19135178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MERQSLDLGL SLGFCFNSGG IATPVPAMEQ KEVSRAAAAA AAEDDMITCS PGSPVSSGSG  60
KRSSSGDEVD DDGAGAAARK KLRLSKDQAA VLEECFRMHH TLTPKQKLAL SNRLGLRPRQ  120
VEVWFQNRRA RTKLKQTEVD YEHLKRWCEQ LAGENRRLER EVAELRALKS SAATTPAAPP  180
LTTLTMCFSC NRVATSSSTA PNVAGVTTSP AAVAMFPGHH PQFLCGFRDG TGAAAAAAVY  240
GGGSSGLAKA VRAAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G02270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812705.16e-76homeobox-leucine zipper protein HOX28-like
SwissprotA2Y9311e-74HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE51e-74HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLA0A0D9WLL70.0A0A0D9WLL7_9ORYZ; Uncharacterized protein
STRINGLPERR06G02270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-28Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]