PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G02280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 289aa    MW: 30451.1 Da    PI: 9.1754
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G02280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-19109163256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++k+q  +Lee+F+ +++++ +++  LA++lgL  rqV vWFqNrRa+ k
  LPERR06G02280.1 109 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTK 163
                      678899***********************************************98 PP
2HD-ZIP_I/II125.52.4e-40109198191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlsk+q+++LEe+F+++++L+p++Kv+la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l++en+rLeke ++Lr +l
  LPERR06G02280.1 109 RKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRWCDRLADENKRLEKELADLR-SL 198
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-18102166IPR009057Homeodomain-like
PROSITE profilePS5007116.52105165IPR001356Homeobox domain
SMARTSM003891.5E-16107169IPR001356Homeobox domain
PfamPF000468.9E-17109163IPR001356Homeobox domain
CDDcd000861.50E-13109166No hitNo description
Gene3DG3DSA:1.10.10.601.2E-17109163IPR009057Homeodomain-like
PRINTSPR000314.0E-5136145IPR000047Helix-turn-helix motif
PROSITE patternPS000270140163IPR017970Homeobox, conserved site
PRINTSPR000314.0E-5145161IPR000047Helix-turn-helix motif
PfamPF021832.0E-10165199IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.8E-17165208IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MMQRSLDLGL SLGLGLASQN SLSSSTTTTS SPAGWAAALN SIVGDVRQSS TAAVSGGEEI  60
LYQHQQQARS STSPDSGSES GNKRERDQLE RSGSGVDDDD AAMDAAGGRK KLRLSKDQAA  120
VLEECFKTHS TLNPKQKVAL ANRLGLRPRQ VEVWFQNRRA RTKLKQTEVD CEVLKRWCDR  180
LADENKRLEK ELADLRSLKS AAAASPSPSP AQSAAAAATL TMCPSCRRVA TAAAAPNHQQ  240
CHPKSNNLSA VAVAVAGGGG GNVLPSHCQF FPNAGAGAAA AQLVTRELF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157165RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G02280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656619.11e-102PREDICTED: homeobox-leucine zipper protein HOX2-like
SwissprotQ5VPE32e-93HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U862e-93HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLA0A0D9WLL80.0A0A0D9WLL8_9ORYZ; Uncharacterized protein
STRINGLPERR06G02280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-54homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]