PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G02660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 362aa    MW: 39415.1 Da    PI: 7.4387
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G02660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.49.9e-1582141155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  ++ Aa+a++ a++k++g
  LPERR06G02660.1  82 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEDAAARAYDLAALKYWG 141
                      789******************888855566447**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1582150IPR016177DNA-binding domain
PfamPF008471.1E-1182141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1483150IPR001471AP2/ERF domain
SMARTSM003802.7E-2383155IPR001471AP2/ERF domain
PROSITE profilePS5103219.17783149IPR001471AP2/ERF domain
PRINTSPR003672.5E-58495IPR001471AP2/ERF domain
PROSITE profilePS5103211.206138217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-7167218IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-7167219IPR016177DNA-binding domain
SMARTSM003801.1E-4172223IPR001471AP2/ERF domain
PRINTSPR003672.5E-5199219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MATETYGLVK DELLLHGQGR FYCEATPTTV TTAASGGGGG GKNVKRRRRE PSSAMSAATV  60
AGNGKDVAGD RSGGSNAIKR SSRFRGVSRH RWTGRFEAHL WDKGTWNPTQ KKKGKQVYLG  120
AYNEEDAAAR AYDLAALKYW GPTTYTNFPV ADYEKELKVM QGVSKEEYLA SIRRKSNGFS  180
RGVSKYRGVA RTQEEAARAY DIAAIEYRGI NAVTNFDLSS YIRWLKPTPH DVTPTSQLLP  240
PPPMAPFAAD VYACVRPSPS PPPTTTTTAL SLLLRSSVFQ ELVARQPTAV VDNGDDVAAA  300
ADVKEPPLTT TTTMLPESDR FGEVLYGDDE AAAAAAYGCS MYELDDSFAL IEDSLWNCFQ  360
SD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115PTQKKKGKQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G02660.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034872e-41AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
GenBankAP0037672e-41AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149622e-41AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641668.11e-157AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6PQQ32e-63AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0D9WLR30.0A0A0D9WLR3_9ORYZ; Uncharacterized protein
STRINGLPERR06G02660.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-56AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]