PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G02700.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 668aa    MW: 71430.6 Da    PI: 8.4039
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G02700.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.3e-30326385159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  LPERR06G02700.3 326 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 385
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-32311385IPR003657WRKY domain
SuperFamilySSF1182903.4E-27319386IPR003657WRKY domain
PROSITE profilePS5081128.311321387IPR003657WRKY domain
SMARTSM007743.4E-37326386IPR003657WRKY domain
PfamPF031063.3E-27327385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAAPPLRRRR RPSPSPSSLY EQNDPGTKGR REGAEGRNLR RGEGLCCSKQ LASLYMEMIK  60
QEKQFVAHEE RLKDEVIKDD GQISDGNFFK SLQNISIRKE ELCSPSPTER LCMDSSSRQT  120
SINLKAQNKV LGQDDKFAST RAEMGEVREE NERLKTLLSR ISQDYRSLQM HFHDVLQQEQ  180
PKKLPDSPTA IPADIEEPEF VSLRLGTSTS KRKKEDKSTT GEVKGSGCTE DFLKIKGGLS  240
LGLSDCRVGA NNSDKMQPDV MTLSPEGSFE DAKDDTIETT EQWPPSKMLK NLRSPGTEVE  300
DDDMAPQPQV KKARVSVRAR CDAPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAAGCPV  360
RKQVQRCADD MSILITTYEG THNHPLSVSA TAMASTTSAA ASMLLSTSST SSLAAYHHPH  420
HHYPSSSSSS SVAVSNGRPF FLPPAAASIT STPSYPTITL DLTSPSPATT NAAFSLTGSN  480
RFSSTFTTPH AGGARLYPPT GGFTFSGSGA AANNPWTTPG YLSYGGSSLP AAHPPYKSSP  540
PSSSSSFYQI QQQQKSAAAA APASAITDTI AKAITADSSF HTALAAAITS YVGTTAATTP  600
ATEDNGKVEL NLGLGMGHSP PSMTSSAASA VQSSSSRMFL QPSPSLGISG STASASSTSP  660
VANREQAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-203263861776Probable WRKY transcription factor 4
2lex_A5e-203263861776Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511LRRRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G02700.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643468.10.0probable WRKY transcription factor 72 isoform X1
TrEMBLA0A0D9WLR90.0A0A0D9WLR9_9ORYZ; Uncharacterized protein
STRINGLPERR06G02700.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-64WRKY DNA-binding protein 72